Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20intermedium_20[genbank_20GCA_5F900096595.1_202017-07- 16] 24 sequences; 23,461,035 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq20 86.0 3e-11 seq11 86.0 3e-11 >seq20 Length=1861728 Score = 86.0 bits (94), Expect = 3e-11 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 349034 aGGTAGACCGACGCATTG--GGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || | ||| |||| | ||| | | ||| || || ||||||| Sbjct 1092599 AGGTAGACCGTC--ATCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATTTCCTTGA 1092542 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | |||| || || ||||||||||||| || || ||||| | ||||| || | || Sbjct 1092541 GACGCGGCACACCGAGCGTCACGTTCTTGGACGACACACCGGCGTAATGGAACGTGTTGA 1092482 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| ||||| |||| ||||||| | || |||||| | Sbjct 1092481 GCGTCATCTGCGTCGCTGGCTCACCGATCGACTGCGCCGCGAGCGTACCGCACATCTCAC 1092422 Query 349212 CGGGCGCGGC 349221 | ||||| || Sbjct 1092421 CCGGCGCCGC 1092412 >seq11 Length=1446674 Score = 86.0 bits (94), Expect = 3e-11 Identities = 332/512 (65%), Gaps = 31/512 (6%) Strand=Plus/Minus Query 88661 GCCCTGCCTGTTCGAGTACGTCTACTTTGCCCACCCAAACTCGGTGCTCGACGGTATACC 88720 |||| | |||||||||||||||||||||||| ||| ||||||| ||||||||||| | Sbjct 459491 GCCCGACATGTTCGAGTACGTCTACTTTGCCCGCCCCGACTCGGTCCTCGACGGTATCTC 459432 Query 88721 GGTCTACGGGGCGCGTCTGGAGATGGG-CAGGTTGTTGGCTGCCCGCATCAGGCATGTG- 88778 ||||||| | | || ||| |||||| | | | ||||||| | | || | | Sbjct 459431 GGTCTACCGATCACGCATGGCGATGGGTGACGCT-TTGGCTG-----AGAATGCGCGCGC 459378 Query 88779 CTGAGT-GCCGAGCAACTGG--CCGAGGTGCAGTGCGTGATCGCCGTGCCGGAGACGGCG 88835 | | | ||||| |||| | |||| | ||| ||| ||||||| || ||| | Sbjct 459377 CCGCCTCGCCGA--CGCTGGTATCAAGGTCGATGTCGTCATCCCCGTGCCCGACACGTCT 459320 Query 88836 CGGATCGCGGCGGGCCAAGTGGCCTACGAGCTCGGCCTGCCTCTGCGCGAGGGCCTGCTC 88895 || |||| || ||||| || | |||||| |||| || || ||| | || Sbjct 459319 CGTGTCGCTGCTCTGCAAGTCGCGCAAAAGCTCGATGTGCCGTACCGTGAAGGCTTCGTC 459260 Query 88896 AGGAACCGGTACCAGACAAGCACTCTGGCCAGGACCTTCATCATGGCCGATGCCGAGAGC 88955 | |||||| ||| | | |||| | || ||||||||| ||| | |||| | Sbjct 459259 AAGAACCGCTAC--GTC---------GGCC-GAACATTCATCATGCCCGGTCAAGAGATC 459212 Query 88956 CGCGGACGGGCCGTGGCGCGCAAGTTCACCGCCGTGGGCCGAGAGTGCAGGGACAAGGCC 89015 || | | |||| |||||| ||| ||| ||| |||| || || || Sbjct 459211 CGACGCAAGAACGTGCGACGCAAGCTCAACGCGATGGCGTTGGAGTTCAACGAAAA---A 459155 Query 89016 GTGGTCGTG---GTGGACGACTCTGTCGTGCGCGGCACCACATCCAAGTTCATAATCGAC 89072 |||||| || || |||||||| ||||||| || || || || || || ||| | Sbjct 459154 GTGGTCTTGATCGTCGACGACTCGATCGTGCGAGGGACGACCTCGAAAGAGATCATCCAG 459095 Query 89073 CTCCTTCGCAAGTCTGGCGCCACCAAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGT 89132 | || | | || || | |||||| | | || ||| | || |||||||| Sbjct 459094 ATGGCCCGTGACGCGGGAGCGAAGAAGGTCATCATGGCCAGTTGTGCGCCGCCGATCCGA 459035 Query 89133 TACCCCAACGTGTACGGCATCGACATACCGTC 89164 ||||| ||||| |||||||| || || ||||| Sbjct 459034 TACCCGAACGTTTACGGCATTGATATGCCGTC 459003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738543307152