Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900008665.1_202016-07-08] 5,182 sequences; 26,789,479 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2607 293 4e-77 seq4965 122 2e-25 seq4942 122 2e-25 seq1956 122 2e-25 >seq2607 Length=453 Score = 293 bits (324), Expect = 4e-77 Identities = 188/204 (92%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT- 184 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 450 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTA 391 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | ||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||| Sbjct 390 TTTTCACCTTGGCCGGAAGGCCCGGGTAATCTTGTGAAACTCTGTCGTGATGGGGATAGA 331 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||||||| ||||||||||||||| ||||||||||| | ||||||| |||| Sbjct 330 ACATTGCAATTATTGTTCTTCAACGAGGAATACCTAGTAAGCGTGATTCATCAGATCGCG 271 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||||| Sbjct 270 TTGATTACGTCCCTGCCCTTTGTA 247 >seq4965 Length=206 Score = 122 bits (134), Expect = 2e-25 Identities = 75/79 (95%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT- 184 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 79 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTA 20 Query 185 TCATCACCTTGGCCGGAAG 203 | |||||||||||||||| Sbjct 19 TTTTCACCTTGGCCGGAAG 1 >seq4942 Length=207 Score = 122 bits (134), Expect = 2e-25 Identities = 75/79 (95%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT- 184 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 129 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTA 188 Query 185 TCATCACCTTGGCCGGAAG 203 | |||||||||||||||| Sbjct 189 TTTTCACCTTGGCCGGAAG 207 >seq1956 Length=687 Score = 122 bits (134), Expect = 2e-25 Identities = 92/107 (86%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| | ||| |||||||| || || | |||||||| Sbjct 163 GAACGAGACCTTAACCTGCTAAATAGTCCCGCCGGCTTTGGCTGGCGGCTGACTTCTTAG 222 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||| || | ||| |||||||||||||||||||||||||| Sbjct 223 AGGGACTATCAGCGTTTAGCTGATGGAAGTTTGAGGCAATAACAGGT 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947150916096