Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1095 174 2e-41 >seq1095 Length=2939 Score = 174 bits (192), Expect = 2e-41 Identities = 186/248 (75%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| |||| || ||||| ||| ||||| | ||||||| Sbjct 1887 CTTAACCTTCCAGCACCGGGCAGGTGTCACCCCCTATACTTCGCCTTACGG-CTTCGCAG 1829 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 || |||||||||| ||||||||||||| |||||| ||||| | | Sbjct 1828 AGAGCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTATTCACTGCGGCTTTC--------- 1778 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 |||| | | |||||||||||||||||||||||||| ||||||||||| Sbjct 1777 ------CGTTAAGAAA-----GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 1729 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||||| ||||| | || || |||||| ||||||| | | | |||||||||||| Sbjct 1728 TTCCTTAACCAGAGTTCTCTCGCACACCTTAGGATTCTCTCCTCGCCTACCTGTGTCGGT 1669 Query 241 TTACGGTA 248 || ||||| Sbjct 1668 TTGCGGTA 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694363371485