Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq8 839 0.0 seq9 89.7 2e-13 >seq8 Length=318055 Score = 839 bits (930), Expect = 0.0 Identities = 1013/1370 (74%), Gaps = 40/1370 (3%) Strand=Plus/Plus Query 1621 GGTAATATAAATGTGTAAAAAATTT---TAACTCATAAGGAGAGTATTG-TAATGTCAAT 1676 ||||| | || | | |||| ||||| || | | |||||||| ||| | ||||||| Sbjct 142128 GGTAAAACAATTAT-TAAATAATTTGCTTATATAAAAAGGAGAGAATTTATTATGTCAAC 142186 Query 1677 TATTACTGATGTCTACGCACGTGAAGTCCTTGACTCACGCGGTAACCCAACACTTGAAGT 1736 |||| |||||| || || || |||||||||||||| || ||||||||||| | ||||| Sbjct 142187 AATTATTGATGTTTATGCTCGCGAAGTCCTTGACTCTCGTGGTAACCCAACTGTAGAAGT 142246 Query 1737 AGAAGTTTACACTGAATCTGGTGCATTCGGTCGCGGTATGGTTCCTTCAGGAGCATCAAC 1796 |||||||||||| ||| || || ||||| |||| ||| || || || ||||| || Sbjct 142247 AGAAGTTTACACAGAAAGCGGCGCTTTCGGACGCGCTATCGTACCAAGTGGTGCATCTAC 142306 Query 1797 TGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAAGCTCGTTACGGTGGTCTTGG 1856 |||||| ||||||||||||||| | ||||| ||||||||| |||||||| |||| || Sbjct 142307 TGGTGAGCACGAAGCAGTAGAATTACGTGACGGTGACAAATCTCGTTACCTTGGTAAAGG 142366 Query 1857 TACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCTGAGCACATCATCGGATTCGA 1916 | | || ||||| | ||||| ||| | |||||||| | ||| || ||||| Sbjct 142367 TGTTGTTAACGCAGTAAACAACGTTAACGAAATTATTGCTCCAGAAATCGCTGGTTTCGA 142426 Query 1917 CGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCTCTTGACGGTACTCCAAACAA 1976 ||| ||| ||| ||||| ||||| || ||||||| | || || ||||||||||| Sbjct 142427 TGTAACTGACCAAGCTGGTATCGACCGTGCTATGATCGAATTAGATGGCACTCCAAACAA 142486 Query 1977 AGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATCGCTGTAGCACGCGCAGCTGC 2036 ||||||||| || || |||||||| |||||||| ||||| || ||||| | |||||| || Sbjct 142487 AGGTAAACTAGGCGCTAACGCTATCCTTGGTGTATCTATGGCAGTAGCTCACGCAGCAGC 142546 Query 2037 TGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGGATTCAACACTAAAGTTCTTCC 2096 ||||| | | | ||||| | ||| | |||||||| |||||||| | ||| | || Sbjct 142547 TGACTTCGTAGGTCTTCCATTATACCGTTACCTTGGTGGATTCAATGCAAAACAATTACC 142606 Query 2097 AACTCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAA--TCGCTTTC 2154 ||||||||||||||||||||||||||||||||||||| | || ||| | | ||| Sbjct 142607 AACTCCAATGATGAACATCATCAACGGTGGTTCTCACGCTGA--TAACAACGTTGACTTC 142664 Query 2155 CAAGAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGT 2214 ||||| || ||||| |||| | |||||| ||||||||||||||| | | ||| |||| Sbjct 142665 CAAGAGTTCATGATCTTACCAGTTGGTGCTCCAACATTCAAAGAATCAATCCGTATGGGT 142724 Query 2215 GCTGAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTA 2274 |||||| | ||||| || ||||| | | | || || ||| | || || ||| Sbjct 142725 GCTGAAGTATTCCATGCACTTAAAGCTGTATTACATGACAAAGGTCTTAACACTGCAGTA 142784 Query 2275 GGTGACGAAGGTGGTTTCGC-----ACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAA 2329 |||||||||||||| ||||| |||| | ||| ||| | || | | | ||| Sbjct 142785 GGTGACGAAGGTGGATTCGCTCCAAACCTTGGTTC----TAACCG-TGAAGCTTTAGAAG 142839 Query 2330 CTATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGAC 2389 |||||| ||||||||||| ||||| || | | || | ||||||| | ||| Sbjct 142840 TAATCATCGAAGCTATCGAAAAAGCTGGTTACAAAGCTGGCGAGAACGTATTCTTAGGAA 142899 Query 2390 TTGACTGTGCATCATCTGAATTCTACGATGCAGAA---CGTAAAGTTTACGACTACACTA 2446 | ||| ||| || ||||| |||||| | |||| ||||| || ||| Sbjct 142900 TGGACGTTGCTTCTTCTGAGTTCTACAACAAAGAAACTGGTAAA---TATGAC------- 142949 Query 2447 AATTTGAAGGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAG 2506 ||| ||| |||||| | ||| ||| |||||||| | || | | ||||| Sbjct 142950 --CTTGCAGGCGAAGGCCGTACTGGCTTAACTTCTGCAGAAATGGTTGATTTCTATGAAG 143007 Query 2507 AATTGGTTAACAAA---TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACT 2563 | | || |||| | |||||||||| |||||||||||||| | ||||||||||||| Sbjct 143008 A---GCTTTGCAAAGACTTCCCAATCATCTCTATCGAAGATGGTTTAGACGAAAACGACT 143064 Query 2564 GGGACGGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACG 2623 |||| ||| |||| | ||||| ||| | |||| |||||| ||||| |||||||||| Sbjct 143065 GGGATGGTCACAAATTATTAACTGAGCGTATCGGTGATAAAGTACAATTAGTTGGTGACG 143124 Query 2624 ACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACT 2683 | || ||||||||||||||| | |||| ||||||| | | || |||||| Sbjct 143125 ATTTATTCGTAACTAACACTCAAAAACTTGCTGAAGGTATCGAAAAAGGTATCTCTAACT 143184 Query 2684 CAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAA 2743 ||||| | || ||||||||||||||||||||||| ||||| ||||| || |||||||||| Sbjct 143185 CAATCTTAATTAAAGTTAACCAAATCGGTACTTTAACTGAGACTTTCGAAGCTATCGAAA 143244 Query 2744 TGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATT 2803 |||| ||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 143245 TGGCTAAACGTGCTGGTTACACAGCAGTTGTATCTCACCGTTCTGGTGAAACTGAAGATG 143304 Query 2804 CAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGT 2863 | ||||||||||| || |||||||||||||||||||| ||||| || || ||||| || Sbjct 143305 CTACAATCGCTGACATCGCAGTTGCAACTAACGCTGGCCAAATCAAAACTGGTTCTATGA 143364 Query 2864 CACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTG 2923 |||||||||||||||||||| ||||||||||| | || ||||||||| |||| || | Sbjct 143365 GCCGTACTGACCGTATTGCTAAGTACAACCAATTATTACGCATCGAAGACGAACTAGGCG 143424 Query 2924 AAGTTGCAGAATACCGTGGTTTGAAATCATTCTACAACTTGAAAAAATAA 2973 || | || | ||| |||| | ||||| ||||| ||| | ||| |||| Sbjct 143425 AAATCGCTGTTTACGATGGTATCAAATCTTTCTATAACATCAAACGATAA 143474 >seq9 Length=252781 Score = 89.7 bits (98), Expect = 2e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 12516 GGAGAGCGTGAAACTGACTTTATTAACTGTGTCATTTGGCGACAACAGGCTGAAAATTTG 12575 || ||||||||| ||||||||||||| ||||| || ||||| |||| || ||||| | Sbjct 22329 GGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATATGGCGTAAACAAGCAGAAAACGTA 22388 Query 12576 GCTAACTGGGCCAAAAAAGGGGCATTGATTGGCATTACTGGACGCATTCAAACACGTAGC 12635 || || | |||||||| || ||| | |||||| ||||||| |||| Sbjct 22389 GCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGTAAT 22448 Query 12636 TACGAGAATCAGCAAGGTCAACGAGTATATGTGACAGAAGTTGTCGCTGAAA 12687 |||||| || | ||| |||| ||||| || ||||||||| | || |||| Sbjct 22449 TACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAA 22500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156028310654580