Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1848 468 1e-129 seq403 113 1e-22 seq4596 82.4 2e-13 seq4232 77.0 8e-12 >seq1848 Length=887 Score = 468 bits (518), Expect = 1e-129 Identities = 344/387 (89%), Gaps = 10/387 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 400 CCACAGGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 456 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 457 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 512 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||| ||||||| ||| | Sbjct 513 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTGCGGCTCCCCTATACGGTTAACCTT-G 570 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-ACAAAGTG 247 | || ||| ||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 571 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCCCATAAAGAA 630 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||||||||||||||||||| | ||||||||||| ||| ||||||||||||| |||||||| Sbjct 631 GGCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTT 690 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 691 CTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTT 750 Query 368 GGAGGATGGTCCCCCCATATTCAGACA 394 ||||||||||||||||||||||||||| Sbjct 751 GGAGGATGGTCCCCCCATATTCAGACA 777 >seq403 Length=16737 Score = 113 bits (124), Expect = 1e-22 Identities = 144/196 (73%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTG 258 ||||| ||||||||||||| |||||||||| | ||| | || ||||| ||| Sbjct 16543 TAAGTTGCTGACCCATTATGCAAAAGGTACAATATTACCAATTAA----GGCTCTATCTG 16598 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318 ||| || | | | |||||| ||| |||||| | || || | ||||| |||| Sbjct 16599 CTTATAAGATTGCTAATTCAGGCTCTGTTTCAC--CAGTCATCGACTTGCTTTTAACCTT 16656 Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 |||||||||||||| |||||||||| | | | || |||||||||||||||||| Sbjct 16657 TCCCTCACGGTACTC-TTCACTATCGCTAAACATATCATACTTAGCCTTGGAGGATGGTA 16715 Query 379 CCCCCATATTCAGACA 394 |||||||||||||||| Sbjct 16716 CCCCCATATTCAGACA 16731 >seq4596 Length=253 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/102 (78%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||||||||||| |||||||||| | | | || |||||||||||||||||| Sbjct 1 TTCCCTCACGGTACTC-TTCACTATCGCTAAACATATCATACTTAGCCTTGGAGGATGGT 59 Query 378 CCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||| | || || |||||| ||||| Sbjct 60 ACCCCCATATTCAGACAGACTTACT-----TCCGTCTTACTC 96 >seq4232 Length=279 Score = 77.0 bits (84), Expect = 8e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||||||||||| |||||||||| | | | || |||||||||||||||||| Sbjct 82 TTCCCTCACGGTACTC-TTCACTATCGCTAAACATATCATACTTAGCCTTGGAGGATGGT 24 Query 378 CCCCCCATATTCAGACA 394 |||||||||||||||| Sbjct 23 ACCCCCATATTCAGACA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241520922496