Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1848 158 3e-36 seq4406 87.8 4e-15 >seq1848 Length=887 Score = 158 bits (174), Expect = 3e-36 Identities = 152/194 (78%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 205 TGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGAC 264 |||| ||||||||| | || ||| |||||| ||||| || |||| | ||| ||| Sbjct 6 TGCCGCAGCTTCGGTGCATGGTTTA-GCCCCGTTACATCTTCCGCGCAGGCCGACTCGAC 64 Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||||||| ||||| || |||||||||||| |||||||| |||||| |||| Sbjct 65 CAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTC 124 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 | || ||||||| ||||||||| | || |||| ||| ||||||||| | |||| Sbjct 125 TGTGCCTTCCCACATCGTTTCCCACTTAACCATGACTTTGGGACCTTAGCTGGCGGTCTG 184 Query 385 GGCTGTTTCCCTCT 398 || ||||||||||| Sbjct 185 GGTTGTTTCCCTCT 198 >seq4406 Length=265 Score = 87.8 bits (96), Expect = 4e-15 Identities = 146/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 ||||||||||| |||||||||||||||| |||||||||| | | || ||| |||| Sbjct 199 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCTCCGATTAACGTTGAA 140 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCC 118 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 139 CA-GGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTC 81 Query 119 TGCATTCTCAC-TCGCATCAACTCCACCACACAGTCACCCGGCAGCTTC-ACCACTGACA 176 |||||| ||| || || | ||||| || | |||| || |||| || || ||| Sbjct 80 AGCATTCGCACTTCTGAT-ACCTCCAGCATGC-CTCACAGCACACCTTCGACGGCTTACA 23 Query 177 CGACGCTCCCCTACCCAACCAC 198 ||||||||||||||||| || Sbjct 22 GAACGCTCCCCTACCCAACAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177524998656