Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq56 91.5 5e-14 seq5 91.5 5e-14 seq3 87.8 6e-13 seq174 84.2 7e-12 >seq56 Length=88608 Score = 91.5 bits (100), Expect = 5e-14 Identities = 273/414 (66%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 23607 GAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGGATTTCGTCAT 23666 |||| || ||||||| ||| ||| |||| | ||||||| |||||| |||| Sbjct 57175 GAATATGTTTCTGCAGCAGGGTCAGGGCGGCCATGCTGCGATGGCCGGCGATTTCATCAT 57234 Query 23667 CCGGTATTGCAGTGATATCGACCAGCGGAAATGC-CTGATGATAAACCGTGGCCGCCAAT 23725 | || || | || | ||||||||||| || || ||| || || | || | |||| Sbjct 57235 CAGGAATGACGGTAACGTCGACCAGCGGGAAAGCGCTGCTG-TAGAGTTTGCCTGCCAGC 57293 Query 23726 TCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATAC-GGCGACGTGGTGCC 23784 | || ||| |||| | ||| || || ||| ||| |||||| ||| ||| || Sbjct 57294 GCCGGATCATCAAACTCATTCAGCCACCGGGTGGAGTAAGGATACGGGCTGCGTTTACCC 57353 Query 23785 GTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTGTTCTAGATGCCG 23844 || || ||||||| || || |||| || | || | | |||| || || || || Sbjct 57354 GT-ATAGAACAGCACGGGTATCACCAGTGGCAACTTCTTATGGCCCGCCTCAAGGTGGCG 57412 Query 23845 CTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCTTTTCCGGGCGGCT 23904 |||||| || || |||||||| || | | ||||| ||||| | || || || Sbjct 57413 CTGCATGGCAGCCACCGCATAACGCATGAGGCGAAAGGCCATGTGTTTATCGGGTGAAGA 57472 Query 23905 CTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTCGTGGTCTTCATCGAGTA 23964 ||||||||| || || || ||| ||||| ||| || | ||||| |||| ||| Sbjct 57473 CTGGTGCTCAATGAGCACGTGGACATAACCCTCA---CCGGCTGTGGTTTTCAGACTGTA 57529 Query 23965 GAGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATAAATGAGCCGGA 24015 ||||| || || |||| | ||||||| || |||| || |||||||| Sbjct 57530 GAGCACGTCGCTAAAGTACTG---CCTCAGGTCATCCTCGACGAACGAGCCGGA 57580 >seq5 Length=325387 Score = 91.5 bits (100), Expect = 5e-14 Identities = 331/506 (65%), Gaps = 19/506 (4%) Strand=Plus/Plus Query 23593 CATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGT 23652 || |||||| || || |||||||||| ||| ||| ||||| | |||||| Sbjct 277456 CAGATCACGCTGCCGGATATGCTTCTGCAACAGGGTCAGAGCCGCCATGCTGCGATGTTG 277515 Query 23653 CAGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAA--TGCCTGATGATAA 23710 || ||| || || || || || | |||| ||||||||||||||| ||| | || Sbjct 277516 CATGATCTCATCGTCAGGAATCACCGTGACATCGACCAGCGGAAAACTGC--GGCAGTAT 277573 Query 23711 ACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATAC 23770 | | || |||||| | || ||| | || ||||| || || || || ||||| Sbjct 277574 AGCCTGTCCGCCAGCGCCGGGTCATCGAACTCATCCAGCCACCGGGTCGAATAGGGATAG 277633 Query 23771 GGCG-ACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCC 23829 || | ||| |||| ||||||||| | ||||| |||| ||| | | | | |||| Sbjct 277634 GGAGTGCGT-CTGCCAGTGTAAAACAGGACGGGAATCACCAGCGGCAACCGCT-TATGCC 277691 Query 23830 CTG-TTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCA 23888 ||| ||| ||||| || ||||| || || || ||||| || | || ||||| ||||| Sbjct 277692 CTGCTTCAAGATGGCGTTGCATGGCAGCCACGGCATAGCGCATCAGCCGAAATGCCATAT 277751 Query 23889 GCTTTTCCGGGCGGCTCTGGTGCTCTATCAG-ACAGTAGACGTAACCATCATGGCCCGTC 23947 | || || || ||| ||||| || || ||| | || || ||||| ||| | Sbjct 277752 GTTTGTCTGGCACAGACTGATGCTCAATGAGTACA-TGGATATATCCATC---GCCAGCG 277807 Query 23948 GTGGTCTTCATCGAGTAGAGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATA 24004 || || || | ||| |||| || || |||| | ||||| || |||| | Sbjct 277808 GTTGTTTTAAGACTGTAAAGCACGTCGCTAAAGTACTG---CCGAAGGTCATCCTCGACA 277864 Query 24005 AATGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGC 24064 ||||| || || ||| || |||| || ||| |||| | ||||| | |||||| Sbjct 277865 AATGACCCCGACTCCAGTTTCAGCGTGCTGAGATCACAGCATATGCGCAGCTCTGGCGGC 277924 Query 24065 AGATGGATTTCCAGAAAGTCCCGAGC 24090 | ||| | |||| || ||||| || Sbjct 277925 AAATGCAGCTCCATGAAATCCCGGGC 277950 >seq3 Length=630259 Score = 87.8 bits (96), Expect = 6e-13 Identities = 322/493 (65%), Gaps = 25/493 (5%) Strand=Plus/Minus Query 23609 ATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGGATTTCGTCATCC 23668 ||||||||||| | ||| |||| ||||| | ||| || || |||||| |||||| Sbjct 548121 ATGTGCTTCTGTAACAGCGTCAGCGCCGCCATGCTGCGGTGCCCCATGATTTCCTCATCC 548062 Query 23669 GGTATTGCAGTGATATCGACCAGCGGAAATG-CCTGATGATAAACCGTGGCCGCCAATTC 23727 || || | |||| ||| ||||| ||||| | ||| ||| | | |||||| Sbjct 548061 GGGATCACCGTGACATCCACCAGTGGAAAGGTACTG-CCATAGAGGTTTTCCGCCAGCGA 548003 Query 23728 TGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGAT-ACGGCGACGTGGTGCCGT 23786 || || |||| ||| || ||||| || ||||||| | ||| ||| ||||| Sbjct 548002 AGGGTCTTCAAATTCGTCGAGCCAGCGTGTTGAATACGGATAAGGGCTGCGT-TTGCCGG 547944 Query 23787 GGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTGTTCTAGATGCCGCT 23846 || ||||| | ||| || |||| ||| ||||| | | |||| ||| || || || | Sbjct 547943 TATAGAACAGTACCGGTATAACCAGCGGCAGCTGCTTATGGCCCGCTTCAAGGTGGCGGT 547884 Query 23847 GCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCTTTTCCGGGCGGCTCT 23906 |||| || || || || || || | || | || ||||| || | ||||| || Sbjct 547883 GCATAGCCGCCACAGCGTATCGCATCAGCCTGAATGCCATATGCCTGTCCGGCGTAGACT 547824 Query 23907 GGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCG-TCGTGGTCTTCATCGAGTAG 23965 | ||||| | ||| || | ||| ||||| |||| | ||||||||| |||| Sbjct 547823 GATGCTCAACCAGGACGTGTATGTACCCATC----CCCGTTACTGGTCTTCAGGCTGTAG 547768 Query 23966 AGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATAAATGAGCCGGAAGCCATC 24022 || ||||| | |||||| || |||||||| | || || ||||| | | Sbjct 547767 AGGATATCGCTGAAATACTGGC---GAAGATCGTCTTCAACGAACGAACCGGATTCAAGT 547711 Query 24023 GCCAATGTGCCGAAATCGC----AGCGCTTACGCAGGTGCGGC-GGCAGATGGATTTCCA 24077 || |||| || |||| |||| |||| || |||| |||||||| | ||||| Sbjct 547710 TTCAGGGTGCTGAGGTCGCATATAGCG----CGCA-GTTCGGCGGGCAGATGCAGTTCCA 547656 Query 24078 GAAAGTCCCGAGC 24090 ||||| || || Sbjct 547655 TGAAGTCGCGGGC 547643 >seq174 Length=42168 Score = 84.2 bits (92), Expect = 7e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 6593 CACCGCCAGCGTGGATGCTGCAACCAGCGCCGGACTTACTGACGCCACTCGGGGAAATTA 6652 |||| || ||||||||| |||| |||||||| |||||||||||||| ||| | |||| Sbjct 26888 CACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGCTCAACGGGATTA 26829 Query 6653 TTTCACTCTCAGACGACGAATCGA 6676 |||||| |||||| |||||||| Sbjct 26828 TTTCACCCTCAGAGAGCGAATCGA 26805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166784184845272