Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq174 398 3e-106 >seq174 Length=42168 Score = 398 bits (440), Expect = 3e-106 Identities = 901/1345 (67%), Gaps = 26/1345 (2%) Strand=Plus/Minus Query 37819 AATGGCGACGTTACGTGAACTGATTATCAAAATTTCGGCAAATTCACAG-TCATTCCAGT 37877 |||||| ||| | || ||||| ||||| |||||||| || || || ||| || || ||| Sbjct 14157 AATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCTCTTTTCAGA 14099 Query 37878 CGGAGATCCAGCGGGCGTCCCGTATGGGCAGTGAATATTACCGGACCCTGCAGAATGGCG 37937 ||||| ||||| || || ||||| || ||||||||||| || || | || | Sbjct 14098 GTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGGAGCAGGGAG 14039 Query 37938 GACGTCAGGCTGCTGCGGCAGCCAGGGAGCAGCGCCGGGC---TCTGG--CTGAGCTGCA 37992 | || |||| ||||| || || | || | ||||| || || ||||| || Sbjct 14038 GCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACCTGAG-TGAG 13980 Query 37993 CAGCCAGTTGACGGAAATCCGC----GCTTCGGCTGTCGGAATGACCGGTGCGTTTGCCN 38048 |||| || |||| | | |||| | | |||||||| | || ||| Sbjct 13979 CAGCTTGT--------ATCCACTAAAGAGACGGCGCTGGAGATGACCGGCGTCTTCGCCG 13928 Query 38049 NNNNNNNNNCCACCGGACACCTGATTTCGCTGGCGGATGAATGGAGCTCCGTGAATGCCC 38108 || | || ||||||| | ||||||| | |||| ||||||| |||| Sbjct 13927 GCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGTGAACGCCC 13868 Query 38109 GTCTGAAACAGGCATCACAGTCATCCGATGAATTTGCGTCATCACAGAAAGTGCTGATGG 38168 | || || ||||| || ||||| | | || || | |||||| |||||||| Sbjct 13867 GCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTGCAGAAATCGCTGATGG 13808 Query 38169 ATATCAGCCAGCGGACAGGCACCGCATTTTCGGATAATGCGGCCCTGTTTGCCCGTTCGG 38228 ||||||||||||| || || || | |||| || |||||| || | ||| ||||| | Sbjct 13807 ATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTATGCGCGTTCCG 13748 Query 38229 CTGCCTCGATGCGTGAATATGGTTACAGTGCTGATGATGTGCTGAAGGTGACGGAGGCCA 38288 |||| || ||||| |||| || ||| ||| | |||||||| ||||| || ||||| Sbjct 13747 CTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGTTACCGAGGCAG 13688 Query 38289 TTTCGACAGGGCTGAAAATCTCCGGTGCCAGTACGGCAGAGGCGGGCTCGGTGATCACCC 38348 | || |||||||| || | || || || ||| | | ||| |||| || ||||||| Sbjct 13687 TATCAACAGGGCTTAAGCTGTCAGGCGCGAGTTCTGAAGAAAGCAGCTCTGTTATCACCC 13628 Query 38349 AGTTCAGTCAGGCGCTGGCGCAGGGTGTATTGCGTGGTGAGGAGTTTAATTCGGTCAATG 38408 ||||||| ||||||||||||||||| || | |||||||||||||| || | || || | Sbjct 13627 AGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTTCAACGCAGTTAACG 13568 Query 38409 AAAGTGGTGACCGGATCGTACGTGCACTGGCTGCGGGTATGGGCGTGGCCCGTAAAGATC 38468 | ||||| || | | ||||| ||||| || ||||||||||| ||||| ||||| | Sbjct 13567 AGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGTTGCCCGCAAAGACC 13508 Query 38469 TGAAGGCAATGGCGGATGACGGAAAACTGACAGCGGATAAAGTGGTCCCCGCGTTAATCA 38528 | ||||| ||||| ||| | || ||||||| ||||||||||| || || | | || Sbjct 13507 TTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGTGCCAGCCCTGACCA 13448 Query 38529 GCCAGCTGGGGATATTACGTGATGAATATGCGGCCATGCCGGAAACGGTTTCCAGTAGTA 38588 ||||||| | | | | | ||| | | | | ||||||| |||| || || | Sbjct 13447 GCCAGCTTGATAAGCTCAGGGGTGAGTTTTCCTCACTGCCGGACTCGGTGTCGGGTTCTG 13388 Query 38589 TCACAAAGGTGGAAAACGCCTTTATGGCCTGGGTGGGCGGTGCGAATGAGGCCAGCGGG- 38647 | || ||||| | ||||||||| ||||| |||| || || || | |||| Sbjct 13387 TTACCAAGGTTCAGAACGCCTTTGAACAGTGGGTTGGCGAGGC-AAACAGTGCGTCGGGC 13329 Query 38648 GTGACAAAAACGCTCTCCGGCATGCTGAACGGTGTTGCCGGACAGATTGATAATGTGGCA 38707 | ||| || || ||||| | ||| || | | | | || || | | || Sbjct 13328 GCAACATCCACCCTTTCCGGGGTTCTGGTTGGCGCATCTAAAAACATAGACACGATCGCC 13269 Query 38708 ACAGCCGTGGGCGCGCTGGTTGCCGTCGGGGTTGCCCGGTACTTTGGCAATATGGCCTCC 38767 || | ||||| ||||| ||| |||| | ||| ||| ||| || ||||| ||| Sbjct 13268 ACCGTTACCGGCGCACTGGTGGCCATCGGTGCTGCAAGGTTCTTCGGGGGCATGGCATCC 13209 Query 38768 GGAGCGATGTCTGCCACGGCAGGACTTGTGACGGCTGCACGTAA-TGAAGTTGCACTGGC 38826 || ||| | ||||| | | || || | || || | | || || || || | | Sbjct 13208 GGTGCGGTTGCTGCCTCAACGGGCGTTTTTACTGC-GTATAAAAGCGAGGTCGCCTTAAC 13150 Query 38827 GGAAGCACAGTTCAGGGGAACGCAGATTGCCACGGCGCGGGCAAGGGCAGCCGTGTACCG 38886 | || ||| | | || || |||||| |||| ||||| || | ||||| || || || Sbjct 13149 CCAGGCGCAGATTCGCGGTACACAGATTTCCACAGCGCGTGCCCGCGCAGCAGTCTATCG 13090 Query 38887 TGCTCAGCAGGCCGTGGCGGCAGCCCGCGGGACGGAGATGCAGATTGCTGCAGAGGCCCG 38946 || |||||||| | ||||| || || || || | | |||| ||||| ||| ||| Sbjct 13089 CGCACAGCAGGCGCTTGCGGCCGCACGGGGAACAGCCACGCAGGAGGCTGCTGAGCGCCG 13030 Query 38947 TCTGGCGGCCACACAGGAACGCCTGAACAGAAATATTGCTGCCAGAAGCGCCGCCCAGAA 39006 ||| || ||| | ||| || | | ||||||| | ||| | | |||||| ||| | Sbjct 13029 TCTTGCTGCCGCGCAGCTTGCTCTCACCCGAAATATGACGGCCCGTACCGCCGCACAGGA 12970 Query 39007 TGCG-CTGAACAGTACAACGGCGGTGGGCTCACGTCTGATGAGCGGTGCGCTGGGGCTGG 39065 ||| || ||||| | || | || || || || |||| |||||||| || || |||| Sbjct 12969 -GCGCCTCAACAGCATCACCTCCGTTGGATCGCGACTGACGAGCGGTGTACTCGGTCTGG 12911 Query 39066 TTGGTGGCGTACCCGGACTGGTGATGCTGGGGGCTGCAGCATGGTACACGCTGTACCAGA 39125 |||| ||| | ||||| ||||| ||||| || || | ||| |||||||| |||| ||| Sbjct 12910 TTGGGGGCATTCCCGGCCTGGTCATGCTCGGAGCCGGAGCCTGGTACACCATGTATCAGC 12851 Query 39126 ATCAGGAGCAGGCCAGGGAGTCTGC 39150 |||||||||||| ||||| || || Sbjct 12850 GTCAGGAGCAGGCAAGGGAATCGGC 12826 Score = 132 bits (146), Expect = 2e-26 Identities = 232/333 (70%), Gaps = 16/333 (5%) Strand=Plus/Minus Query 26128 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 26187 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 26188 AACAGGCGAATGCCACCATTACTGGCATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 26247 | | ||| |||| |||||| ||| |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 26248 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 26303 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 26304 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGGATCAACGCCACCTGCTCCGGTACCGT 26362 || ||| ||||| | ||| ||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 26363 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 26422 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 26423 CGCTGAACGGGATTATTTCATCCTCAGAGAACG 26455 |||| ||||||||||||||| ||||||||| || Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAGCG 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175532323157124