Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-33 seq83 87.8 3e-12 seq2 87.8 3e-12 seq1 87.8 3e-12 >seq4 Length=447486 Score = 158 bits (174), Expect = 2e-33 Identities = 184/246 (75%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 196118 AAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCAC-AGATGCGCTTCGA 196176 |||||||||||||||||||| || || | | | || | | ||| ||||||| ||| | Sbjct 112188 AAAGCTGACCGTACCGGCACCGGTACG-CTTTCAATTTTTGGTCACCAGATGCGTTTCAA 112130 Query 196177 TCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCA 196236 |||||| || || || |||||||||||||| |||||| ||| | || || || ||||| Sbjct 112129 TCTGCAGGATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCA 112070 Query 196237 TGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGT 196296 ||| ||||||||||| || || || || ||||||||| || || || || ||| || Sbjct 112069 TGAGCTGCTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGT 112010 Query 196297 CTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCA 196356 ||| |||||| | ||||||||| | || || | || || ||||| || || || || Sbjct 112009 CTCCATCTGGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACA 111950 Query 196357 GTGGCG 196362 |||||| Sbjct 111949 GTGGCG 111944 Score = 147 bits (162), Expect = 3e-30 Identities = 223/315 (71%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGC 196839 || || ||||| |||||||| | ||||| | || ||||| || | ||||| |||||||| Sbjct 111762 TCCTGCCAGCTCTATCAGCGCTCGTGCG-ACATCTTCCTGGGCCTGCCGTTTAACATCGC 111704 Query 196840 GTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTT 196899 || || |||||| | || ||||||||||| ||| | || |||||| || Sbjct 111703 CAGCTATGCGTTGCTGGTACATATGGTGGCGCAGCAGTGCGATCTGCAGGTGGGCGACTT 111644 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 ||| ||||| |||||||| |||| ||||| || || |||| |||| || Sbjct 111643 CGTCTGGACCGGCGGTGATACCCACCTCTACAGTAACCATCTGGAGCAGGCGCGCCTGCA 111584 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTAT 197019 |||| | || ||||| || |||| | || ||||||||||||||||||| | Sbjct 111583 GCTGACCCGCGAACCGCGTCCGCTGCCATCACTTGTTATCAAACGCAAACCGGCGTCGCT 111524 Query 197020 CTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAA 197079 || || || | |||||||| || || | | |||||||||||||||||| ||||| || Sbjct 111523 GTTTGACTATCAGTTCGAAGATTTTGAGATTGAAGGCTACGATCCGCATCCCGCGATCAA 111464 Query 197080 AGCCCCGGTGGCTAT 197094 |||||| || || || Sbjct 111463 AGCCCCTGTCGCCAT 111449 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 196537 CGATCCTGATAACCGCCGTATCATTGTATCGGCCTGGAACGTCGGCGAGCTAGACGATAT 196596 |||||| || ||||| || || || || |||||||||||||||||||| ||| || Sbjct 111877 CGATCCCGACTCACGCCGGATTATCGTTTCTGCCTGGAACGTCGGCGAGCTGAGCGAGAT 111818 Query 196597 GGCGTTAGCTCCATGCCATGCTTTCTTCCAGTTTTAC 196633 |||| | ||||| ||||| || ||||||||||| ||| Sbjct 111817 GGCGCTGGCTCCTTGCCACGCGTTCTTCCAGTTCTAC 111781 >seq83 Length=66758 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 66642 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 66583 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 66582 CCGTTCCGCCA 66572 >seq2 Length=722220 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 117 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 176 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 177 CCGTTCCGCCA 187 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 6820 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 6879 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 6880 CCGTTCCGCCA 6890 >seq1 Length=970878 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 378785 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 378726 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 378725 CAGAGGAGCCAAATTT 378710 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 479467 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 479408 Query 4266 CAGGGTCGCCACATT 4280 ||| | |||| ||| Sbjct 479407 CAGAGGAGCCAGATT 479393 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 403726 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 403667 Query 4266 CAGGGTCGCCA 4276 ||| | |||| Sbjct 403666 CAGAGGAGCCA 403656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771480975580680