Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq174 158 6e-34 >seq174 Length=42168 Score = 158 bits (174), Expect = 6e-34 Identities = 224/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 66728 TGGAAAGTTGAAAAGCAGCCCCGCTGGCTGGTGGCTGCGATTAAAAAGACGATTTCCAGT 66787 ||| |||| |||||||| || ||||||||||| || ||||||||||| || || ||| Sbjct 34682 TGGCAAGTAGAAAAGCAACCAGCATGGCTGGTGGCGGCAATTAAAAAGACCATCTCAAGT 34623 Query 66788 CTGCATGGCGGTTATGAAGAAGCTGCGGAATGGCTGGATGTCACCAAAGATGCTCTGTTT 66847 || | || || |||| |||||| || |||||| ||| || || ||||||| |||| Sbjct 34622 CTTCCGGGTGGGTATGCAGAAGCAGCTGAATGGTTGGGCGTGACTGAAGATGCATTGTTC 34563 Query 66848 AACCGCCTGCGTACTGGTGGTGATCAGATCTTCCCGATTGGGTGGGCGCTGGTACTGCAA 66907 ||||| || ||||| ||| |||||||| ||||| || || |||||| |||| |||||| Sbjct 34562 AACCGTCTTCGTACCAATGGCGATCAGATTTTCCCAATGGGCTGGGCGATGGTCCTGCAA 34503 Query 66908 CGTGCCGGAGGAACCTATCACCTGGCACATTCAGTAGCCAGGGCATCAGGTGGCGTTTTT 66967 | || | | ||| | ||| | || | | || || ||| |||| Sbjct 34502 CAGGCAAGCGACACCAAGCACATCGCTAACGCGGTGTCCCTTCAGTCAAACAGCGTCAAC 34443 Query 66968 GTTCCGCTGGCAGATATGGAAGAAGTGGATAACGCAGATATTAATCAGCGCCTGCTGGAA 67027 |||||||| | | || || || || |||||||||||||| |||||||| ||| |||| Sbjct 34442 GTTCCGCTTGTGGGCATTGAGGATGTTGATAACGCAGATATCAATCAGCGACTGATGGAG 34383 Query 67028 GCGATTGAGCAGATC 67042 | ||||| |||| Sbjct 34382 TCAGTTGAGTGGATC 34368 Score = 158 bits (174), Expect = 6e-34 Identities = 224/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 27140 TGGAAAGTTGAAAAGCAGCCCCGCTGGCTGGTGGCTGCGATTAAAAAGACGATTTCCAGT 27199 ||| |||| |||||||| || ||||||||||| || ||||||||||| || || ||| Sbjct 34682 TGGCAAGTAGAAAAGCAACCAGCATGGCTGGTGGCGGCAATTAAAAAGACCATCTCAAGT 34623 Query 27200 CTGCATGGCGGTTATGAAGAAGCTGCGGAATGGCTGGATGTCACCAAAGATGCTCTGTTT 27259 || | || || |||| |||||| || |||||| ||| || || ||||||| |||| Sbjct 34622 CTTCCGGGTGGGTATGCAGAAGCAGCTGAATGGTTGGGCGTGACTGAAGATGCATTGTTC 34563 Query 27260 AACCGCCTGCGTACTGGTGGTGATCAGATCTTCCCGATTGGGTGGGCGCTGGTACTGCAA 27319 ||||| || ||||| ||| |||||||| ||||| || || |||||| |||| |||||| Sbjct 34562 AACCGTCTTCGTACCAATGGCGATCAGATTTTCCCAATGGGCTGGGCGATGGTCCTGCAA 34503 Query 27320 CGTGCCGGAGGAACCTATCACCTGGCACATTCAGTAGCCAGGGCATCAGGTGGCGTTTTT 27379 | || | | ||| | ||| | || | | || || ||| |||| Sbjct 34502 CAGGCAAGCGACACCAAGCACATCGCTAACGCGGTGTCCCTTCAGTCAAACAGCGTCAAC 34443 Query 27380 GTTCCGCTGGCAGATATGGAAGAAGTGGATAACGCAGATATTAATCAGCGCCTGCTGGAA 27439 |||||||| | | || || || || |||||||||||||| |||||||| ||| |||| Sbjct 34442 GTTCCGCTTGTGGGCATTGAGGATGTTGATAACGCAGATATCAATCAGCGACTGATGGAG 34383 Query 27440 GCGATTGAGCAGATC 27454 | ||||| |||| Sbjct 34382 TCAGTTGAGTGGATC 34368 Score = 156 bits (172), Expect = 2e-33 Identities = 218/306 (71%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 72777 TGATCCGGAATCGCCGGAAAGCTTCATGTTACGTCCGAAACGCCGTCGATGGGTCAATGA 72836 ||| |||||||| || ||| |||||| || || || || || |||| | ||| Sbjct 29516 TGACCCGGAATCACCAGAATCATTCATGAAGCGCCCCAAGCGTAAGCGCTGGGAAAGTGA 29457 Query 72837 GAGATATACCCGCTGGGTTAAATCCCAGCCGTGCGCGTGCTGCGGGAAGCAGGCGGATGA 72896 || |||||| | ||||| ||||| ||| ||||||| || ||||| |||||| || || Sbjct 29456 GAAATATACAAGATGGGTAAAATCGCAGACGTGCGCATGTTGCGGCGTGCAGGCTGACGA 29397 Query 72897 TCCGCATCACCTGATAGGCCACGGTCAGGGAGGGATGGGAACAAAGGCGCATGACCTCTT 72956 ||| |||||| | || || || || ||||| || |||||||| ||||||||||| | || Sbjct 29396 TCCTCATCACATCATCGGACATGGACAGGGGGGAATGGGAACGAAGGCGCATGATTTATT 29337 Query 72957 TGTGCTGCCGTTGTGCAGAACGCATCACAATGAGTTACATGCGGACACCGTGGCATTCGA 73016 |||| | ||| | |||||| |||||||| |||| | || ||| | || || || Sbjct 29336 TGTGATACCGCTATGCAGAGCGCATCACGATGAACTGCACCGGGATATGAGAGCGTTTGA 29277 Query 73017 AGAGAAATACGGCTCTCAACTGGAGTTGATATTTCGTTTTATCGATCGTGCGCTGGCAAT 73076 || |||||||||| ||| | ||| || | || | || |||||| ||| | ||| | Sbjct 29276 AGCGAAATACGGCAGTCAGATAGAGCTGCTGTTCAGGTTCCTCGATCACGCGATTGCAGT 29217 Query 73077 AGGCGT 73082 || || Sbjct 29216 CGGAGT 29211 Score = 149 bits (164), Expect = 3e-31 Identities = 218/307 (71%), Gaps = 1/307 (0%) Strand=Plus/Minus Query 33313 TGATCCGGAATCGCCGGAAAGCTTCATGTTACGTCCGAAACGCCGTCGATGGGTCAATGA 33372 ||| |||||||| || ||| |||||| || || || || || |||| | ||| Sbjct 29516 TGACCCGGAATCACCAGAATCATTCATGAAGCGCCCCAAGCGTAAGCGCTGGGAAAGTGA 29457 Query 33373 GAGATATACCCGCTGGGTTAAATCCCAGCCGTGCGCGTGCTGCGGGAAGCAGGCGGATGA 33432 || |||||| | ||||| ||||| ||| ||||||| || ||||| |||||| || || Sbjct 29456 GAAATATACAAGATGGGTAAAATCGCAGACGTGCGCATGTTGCGGCGTGCAGGCTGACGA 29397 Query 33433 TCCGCATCACCTGATAGGCCAACGGTCAGGGAGGGATGGGAACAAAGGCGCATGACCTCT 33492 ||| |||||| | || || || || ||||| || |||||||| ||||||||||| | | Sbjct 29396 TCCTCATCACATCATCGGACAT-GGACAGGGGGGAATGGGAACGAAGGCGCATGATTTAT 29338 Query 33493 TTGTGCTGCCGTTGTGCAGAACGCATCACAATGAGTTACATGCGGACACCGTGGCATTCG 33552 ||||| | ||| | |||||| |||||||| |||| | || ||| | || || | Sbjct 29337 TTGTGATACCGCTATGCAGAGCGCATCACGATGAACTGCACCGGGATATGAGAGCGTTTG 29278 Query 33553 AAGAGAAATACGGCTCTCAACTGGAGTTGATATTTCGTTTTATCGATCGTGCGCTGGCAA 33612 ||| |||||||||| ||| | ||| || | || | || |||||| ||| | ||| Sbjct 29277 AAGCGAAATACGGCAGTCAGATAGAGCTGCTGTTCAGGTTCCTCGATCACGCGATTGCAG 29218 Query 33613 TAGGCGT 33619 | || || Sbjct 29217 TCGGAGT 29211 Score = 89.7 bits (98), Expect = 3e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 77146 GCGAAAACCGTTGACCACATTATTCCTAAAGCGCATGGCGGCACTGATGCTGACTGCAAT 77205 || || || ||||||||||| ||||| ||||| ||||| || || |||| ||| |||| Sbjct 22939 GCTAAGACGGTTGACCACATCATTCCGAAAGCACATGGGGGTACCGATGACGACAGCAAC 22880 Query 77206 CTGCAGAGTCTGTGCTGGCCGTGTCATAAGGCGAAGACGGCC 77247 || ||| | ||||||||||||| || ||||| ||||| ||| Sbjct 22879 CTTCAGGCTTTGTGCTGGCCGTGCCACAAGGCAAAGACAGCC 22838 Score = 87.8 bits (96), Expect = 9e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 37682 GCGAAAACCGTTGACCACATTATTCCTAAAGCGCATGGCGGCACTGATGCTGACTGCAAT 37741 || || || ||||||||||| ||||| ||||| ||||| || || |||| ||| |||| Sbjct 22939 GCTAAGACGGTTGACCACATCATTCCGAAAGCACATGGGGGTACCGATGACGACAGCAAC 22880 Query 37742 CTGCAGAGTCTGTGCTGGCCGTGTCATAAGGCGAAGAC 37779 || ||| | ||||||||||||| || ||||| ||||| Sbjct 22879 CTTCAGGCTTTGTGCTGGCCGTGCCACAAGGCAAAGAC 22842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247455990433624