Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq36 271 1e-70 seq15 271 1e-70 seq12 185 1e-44 seq11 100 5e-19 >seq36 Length=474693 Score = 271 bits (300), Expect = 1e-70 Identities = 179/198 (90%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct 5837 ACCTGTTATTGCCTCAAACTTCCATCAGCTAAACGCTGATAGTCCCTCTAAGAAGTCAGC 5896 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| ||| || || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5897 CGCCAGCCAAAGCCGGCGGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 5956 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 5957 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAGATCAAGA 6016 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 6017 AAGAGCTATCAATCTGTC 6034 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5326 TACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 5385 >seq15 Length=534025 Score = 271 bits (300), Expect = 1e-70 Identities = 179/198 (90%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct 497758 ACCTGTTATTGCCTCAAACTTCCATCAGCTAAACGCTGATAGTCCCTCTAAGAAGTCAGC 497699 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| ||| || || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 497698 CGCCAGCCAAAGCCGGCGGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 497639 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 497638 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAGATCAAGA 497579 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 497578 AAGAGCTATCAATCTGTC 497561 Score = 271 bits (300), Expect = 1e-70 Identities = 179/198 (90%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct 509576 ACCTGTTATTGCCTCAAACTTCCATCAGCTAAACGCTGATAGTCCCTCTAAGAAGTCAGC 509517 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| ||| || || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 509516 CGCCAGCCAAAGCCGGCGGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 509457 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 509456 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAGATCAAGA 509397 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 509396 AAGAGCTATCAATCTGTC 509379 Score = 271 bits (300), Expect = 1e-70 Identities = 179/198 (90%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct 521409 ACCTGTTATTGCCTCAAACTTCCATCAGCTAAACGCTGATAGTCCCTCTAAGAAGTCAGC 521350 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| ||| || || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 521349 CGCCAGCCAAAGCCGGCGGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 521290 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 521289 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAGATCAAGA 521230 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 521229 AAGAGCTATCAATCTGTC 521212 Score = 271 bits (300), Expect = 1e-70 Identities = 179/198 (90%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| ||| | || ||||||||||||||||| |||| Sbjct 533269 ACCTGTTATTGCCTCAAACTTCCATCAGCTAAACGCTGATAGTCCCTCTAAGAAGTCAGC 533210 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| ||| || || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 533209 CGCCAGCCAAAGCCGGCGGGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 533150 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 533149 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAGATCAAGA 533090 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 533089 AAGAGCTATCAATCTGTC 533072 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498269 TACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 498210 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510087 TACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 510028 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521920 TACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 521861 Score = 84.2 bits (92), Expect = 3e-14 Identities = 56/60 (93%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 533777 TACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGG-CCAGAACATCTAA-GGCATCACAG 533720 >seq12 Length=1732111 Score = 185 bits (204), Expect = 1e-44 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676504 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 1676445 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||| | ||||||||||||||||||||||||| Sbjct 1676444 GAACGGCCATGCACCACCAACCACAAGATCAAGAAAGAGCTATCAATCTGTC 1676393 >seq11 Length=1812982 Score = 100 bits (110), Expect = 5e-19 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 81 TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG 140 ||||| ||| | || ||||||||||||||||| ||||| ||| ||| || | ||| Sbjct 1173992 TCCATCAGCTAAACGCTGATAGTCCCTCTAAGAAGTCAGCCGCCAGCCAAAGCCCGCGGG 1173933 Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 |||||||||||||||||||||||||||||||||| Sbjct 1173932 ACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 1173898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799714397