Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq104 376 5e-102 seq140 132 9e-29 >seq104 Length=808 Score = 376 bits (416), Expect = 5e-102 Identities = 241/260 (93%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 60 GGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGA 118 || || ||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 279 GGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGA 220 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 219 ATATATTAGCATGGAATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGAC 160 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 159 CATCGTAATGATTAATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAAT 100 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| Sbjct 99 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAAT 40 Query 299 CAGTGAACGAAAGTTAGGGG 318 || |||||||||||||||| Sbjct 39 CA-AGAACGAAAGTTAGGGG 21 >seq140 Length=577 Score = 132 bits (146), Expect = 9e-29 Identities = 93/105 (89%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 576 AGTATTCAGTTGCTAGAGGTGAAATTCTTAGATTTACTGAAGACTAACTACTGCGAAAGC 517 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||| |||||||||||||| ||||||| |||||||| Sbjct 516 ATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAGGTTAGGGG 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196915776