Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naganishia_20albida_20[genbank_20GCA_5F001468955.1_202015-12-17] 337 sequences; 20,877,543 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq184 598 1e-168 seq104 439 7e-121 seq177 435 9e-120 seq284 105 2e-20 >seq184 Length=417 Score = 598 bits (662), Expect = 1e-168 Identities = 385/417 (92%), Gaps = 3/417 (1%) Strand=Plus/Minus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 358 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 357 AATCGAACCCTAATTCCCCGTTACCCGTTGCCACCATGGTAGGCCTCTATCCTACCATCG 298 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT 259 ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct 297 AAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCACAAGGCCATGCGATTCGAG 238 Query 260 AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACA 319 ||||||| ||||||||||||| || | | |||||||||||||||||||||||| Sbjct 237 AAGTTATCATGAATCACCAAGAAGGGCTTTCACCCATTGGTTTTTTATCTAATAAATACA 178 Query 320 CCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 |||||||| |||||||||| |||| ||||||||||||||||||||||||||| ||||||| Sbjct 177 CCCCTTCCAGAAGTCGGGGCTTTTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCC 118 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 117 ATGTAGCAAGGTACCATCAAATAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCAC 58 Query 438 TGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||| | ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 AGTATGAATTTGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 1 >seq104 Length=808 Score = 439 bits (486), Expect = 7e-121 Identities = 288/318 (91%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 491 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 550 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 551 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 610 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 611 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCCACCATGGTA 670 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 671 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCA 730 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | | ||||| Sbjct 731 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCTTTCACCCATTGGT 790 Query 301 TTTTTATCTAATAAATAC 318 |||||||||||||||||| Sbjct 791 TTTTTATCTAATAAATAC 808 >seq177 Length=435 Score = 435 bits (482), Expect = 9e-120 Identities = 288/313 (92%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT 255 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCACAAGGCCATGCGATT 60 Query 256 CGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAA 315 || |||||||||||||||| ||| ||| || |||| | ||| |||||||||||||||| Sbjct 61 CGAAAAGTTATTATGAATCATCAAAGAGTCC-GAAGA-CATTGATTTTTTATCTAATAAA 118 Query 316 TACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 |||| | ||||| ||| ||| | |||| ||||||||||||||||||||||||||| ||| Sbjct 119 TACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCTAGAATTACCACAGTT 178 Query 374 AT-CCATGTAGTAA-GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 238 Query 432 TTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TTTCACTGTATAAATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 298 Query 492 TGACTACTGGCAG 504 ||||||||||||| Sbjct 299 TGACTACTGGCAG 311 >seq284 Length=138547 Score = 105 bits (116), Expect = 2e-20 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| |||| ||||||| |||||||||| |||| ||||||||||||||||| || |||| Sbjct 8237 TAACTTGCACGCCTGC-GCCTTCCTTGAATGTAATAGCCGTTTCTCAGGCTTTCTTTCCG 8295 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTT 168 || ||||| ||||||||| ||||||||||| Sbjct 8296 GAGTCGAATCCTAATTCCGCGTTACCCGTT 8325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394909952