Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phanerochaete_20chrysosporium_20[genbank_20GCA_5F001910725.1_202016- 12-20] 174 sequences; 39,205,125 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 212 5e-50 seq35 136 3e-27 >seq1 Length=2640167 Score = 212 bits (234), Expect = 5e-50 Identities = 377/544 (69%), Gaps = 7/544 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || || || |||||||| | |||||| | || | Sbjct 597076 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCTGAGGAGATGGACCTC 597017 Query 61147 TCCAAAGACATGAATGACTGGG---AGCGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| || | | |||||| | ||| | | ||| | || | | | ||||| Sbjct 597016 TCCAAGGATCTTCACGACTGGACCAACCGTCTCAACGA-CAACGAGCGATACTTCATCTC 596958 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | || ||||| ||||| || |||||||| ||||| || || | | || || Sbjct 596957 GCATGTCCTCGCCTTCTTCGCCGCGTCCGACGGTATTGTCAACGAAAACCTCGTCGAGCG 596898 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| | |||||||| || | ||||| || || ||||||||||||||||| || Sbjct 596897 TTTCAGCAACGAGGTGCAGGTCGCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 596838 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| |||| | ||||| || |||||||||| || | | Sbjct 596837 GGAGAACATCCACTCCGAGACGTACTCCCTGCTCATTGACACGTACATCAAAGACCCGAA 596778 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || || | ||||| | ||||||||||| || || | ||| ||| || || Sbjct 596777 GCAGCGCGAGCACCTGTTCGACGCCATCGAGACCATCCCCTGCATTAAGAAGAAGGCCGA 596718 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 ||||||| || |||||| | | | || | || | ||| || | | || || Sbjct 596717 TTGGGCCCTCCGCTGGATCTCTGACAAGAAATCTTCCTTCGCTGAGCGCCTTGTCGCGTT 596658 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 || | ||||||||| | || ||| ||| || || || | ||||| ||| | ||||| Sbjct 596657 CGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCGTCCATCTTCTGGCTCAAGAA 596598 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCA 61621 |||||||| ||||||||||| |||||| || ||| | || | || | |||||||||| Sbjct 596597 GCGTGGACTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATCAGCA-GGGACGAGGGCA 596539 Query 61622 TGCA 61625 |||| Sbjct 596538 TGCA 596535 Score = 134 bits (148), Expect = 1e-26 Identities = 284/416 (68%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| || || || ||||| | | ||||| ||| | | Sbjct 598936 GCATTCTTCGCCGCGTCCGACGGCATTGTAAACGAGAACCTCGTTGAACGCTTCTCAAAC 598995 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || | | || || ||||| ||||||||||||||||| |||||||| | Sbjct 598996 GAGGTACAGGCTGCAGAAGCTCGTTGCTTCTACGGCTTCCAGATAATGATGGAGAACATA 599055 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 || ||||||| || | || || || || ||||||| ||| | || || || Sbjct 599056 CATTCGGAGACATATTCCCTCCTAATTGACACCTACATCAAGGACCCTCAAGAGCGCGAG 599115 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 ||||| | || || ||||| || ||| | ||| ||| || || |||||| | Sbjct 599116 TTTCTGTTCGACGCGATAGAGACCATCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTG 599175 Query 61453 AATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 |||||| ||| |||| || | |||| || ||| | | | || ||||| | || Sbjct 599176 CGCTGGATC-TCAG-ACAAGCGATCATCATTCGGCGAAAGGCTTGTCGCGTTTGCTGCGG 599233 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 |||| || |||| ||| ||| ||||| |||| || ||| | ||||| || || | Sbjct 599234 TCGAAGGAATATTCTTCTCGGGAAGTTTTGCGTCAATATTCTGGCTCAAGAAGCGGGGGC 599293 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCA 61625 | |||||||| || |||||| |||||| | || | || | |||||||||||||| Sbjct 599294 TCATGCCCGGCCTCACCTTCTCGAATGAGCTCATCAGCA-GAGACGAGGGCATGCA 599348 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || ||| |||||||| | ||||| |||||||| | || |||| || || || || Sbjct 596371 GATGCTCTGCCCGTCGCGCTCATTGGCATGAACTCGAAGCTCATGTGCCAATACATCGAG 596312 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 || || |||||||||||| | |||| | ||| || | |||| || ||| ||| Sbjct 596311 TTCGTCGCCGACCGTCTGCTCGTCGCGCTCGGTGACGAGAAGGTCTACAACGCGACCAAC 596252 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 || ||||| |||||||||||||| ||||| | |||||||| || || |||||||| || Sbjct 596251 CCCTTTGACTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGG 596192 Query 61918 GTAGGCGACTA 61928 || |||||| Sbjct 596191 GTGTCCGACTA 596181 >seq35 Length=923662 Score = 136 bits (150), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || ||||| || ||||| || ||||||||||| ||||| || || |||||| | || Sbjct 866619 AAGAGATCGGGAATCCACAGCGCGTAGAAGAGGTCGCGGGCACGAACCTCCTCCTTACCA 866678 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 ||||| || || | ||||| ||| || ||||| ||||| ||||| || || ||||||||| Sbjct 866679 TGATTCTTACGGAGGTCGATGAAGTCGAAGATATCGGCGTGCCAGGGCTCGAGGTAGATG 866738 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATT--GTTGA 66521 ||||| | ||| ||| || |||||| |||||||| |||||||| | || || | Sbjct 866739 GCGAAAGCACCCGGACGCTTATTGCCACCCTGGTCGACATAGCGAGC--CGTTGCGTCGT 866796 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | | || | ||| || || | || || || | ||| || |||||| ||||| Sbjct 866797 AAGCGCGAAGCATGGGAACAATGCCATTCGAATAGCCGTTCGTGCCGGCGATG 866849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567156907360