Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq59592 185 2e-44 seq7670 132 9e-29 seq7671 123 5e-26 seq39714 118 2e-24 seq90617 100 6e-19 >seq59592 Length=613 Score = 185 bits (204), Expect = 2e-44 Identities = 242/329 (74%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| ||| ||||| | | | | Sbjct 323 AGGGGAGTGAAATAGAACCTGAAACCGTGTGCTTACAAAAAGTCAGAGCCCGATTAATGG 264 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA-GCGAGGTTAAG 129 |||| ||||||||||||| | ||||| || ||||||| ||| || || |||||||| Sbjct 263 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGTTCCCGTGCAAGGTTAAG 206 Query 130 GGCTTCAG--GCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG--AGTTGGT 185 | | || ||| | ||||| || ||||||||| || || |||||||| ||| || Sbjct 205 G---TGAGAAGCCGG--AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGACATTAGTACGT 151 Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGT 245 || ||||| ||||||| ||||||||||| | |||| ||||| ||||||| ||| Sbjct 150 GGACGTAGACCCGAAACCGGGTGATCTACCCCTGTCCAGGATGAAGGTACGGTAACACGT 91 Query 246 GATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGA 305 |||||| ||||||| |||||||||||| |||||| | |||||| || || Sbjct 90 ACTGGAGGTCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGGGGGTAGCGGAGA 31 Query 306 AAGGCCAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||| ||| |||||| || Sbjct 30 AATTCCAATCGAACTCGGAGATAGCTGGT 2 >seq7670 Length=301 Score = 132 bits (146), Expect = 9e-29 Identities = 146/191 (76%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 || || || ||||||||| ||||| |||||| | ||| | ||| ||||| ||||||| Sbjct 246 AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCG 187 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-TGGAGGACCGAACCGG 263 | |||||| ||| |||||||||||||| |||||| | ||| |||||||||||||| Sbjct 186 GGCGATCTATCCATGAGCAGGTTGAAGT--AGGTAACAC-TGACTGGAGGACCGAACCCA 130 Query 264 TAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGG 323 |||||||||| |||||||| | || | || ||||||||| |||||| || || Sbjct 129 CTTCCGTTGAAAAGGCAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGG 70 Query 324 AAATAGCTCGT 334 | |||||| || Sbjct 69 AGATAGCTGGT 59 >seq7671 Length=245 Score = 123 bits (136), Expect = 5e-26 Identities = 145/191 (76%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 || || || ||||||||| ||||| |||||| | ||| | ||| ||||| ||||||| Sbjct 190 AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCG 131 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-TGGAGGACCGAACCGG 263 | |||||| ||| |||||||||| ||| |||||| | ||| |||||||||||||| Sbjct 130 GGCGATCTATCCATGAGCAGGTTG-AGT--AGGTAACAC-TGACTGGAGGACCGAACCCA 75 Query 264 TAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGG 323 |||||||||| |||||||| | || | || ||||||||| |||||| || || Sbjct 74 CTTCCGTTGAAAAGGCAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGG 15 Query 324 AAATAGCTCGT 334 | |||||| || Sbjct 14 AGATAGCTGGT 4 >seq39714 Length=362 Score = 118 bits (130), Expect = 2e-24 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACC 256 ||||||| | |||||| || || |||| ||||| | |||||| | |||||| || Sbjct 3 CGAAACCCGGCGATCTATGCATGACCAGGATGAAGGTGTGGTAACACACACTGGAGGTCC 62 Query 257 GAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCA 316 |||||| | |||||||||||||| ||||||| | | | |||||||||||||||||||| Sbjct 63 GAACCGATTAACGTTGAAAAGTTACCGGATGAGTTGTGCTTAGGGGTGAAAGGCCAATCA 122 Query 317 AACTGGGAAATAGCTCGT 334 | | ||||||||||| || Sbjct 123 AGCCGGGAAATAGCTGGT 140 >seq90617 Length=344 Score = 100 bits (110), Expect = 6e-19 Identities = 129/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 161 AGCCTTAACAGGGCGACG--AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCAC 218 || || || |||||||| ||| |||| ||||| ||||||| ||||||||||| Sbjct 344 AGTCTGAATAGGGCGACATTAGTACGTGGACGTAGACCCGAAACCGGGTGATCTACCCT- 286 Query 219 GAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGT 278 | |||| ||||| ||||||| ||| |||||| ||||||| |||||||||||| Sbjct 285 GTCCAGGATGAAGGTACGGTAACACGTACTGGAGGTCCGAACCCACGCACGTTGAAAAGT 226 Query 279 TTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||| | |||||| || |||| |||||| |||| ||| |||||| || Sbjct 225 GCGGGGATGAGGTGGGGGTAGCGGAGAAATTCCAATCGAACTCGGAGATAGCTGGT 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 971532441600