Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3669 398 1e-108 seq956 280 2e-73 seq587 273 3e-71 seq600 255 9e-66 seq83552 136 6e-30 seq35765 87.8 3e-15 >seq3669 Length=474 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 336 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 279 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 219 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 218 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 159 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 158 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTGGGCG 99 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 98 GCCATAGTCCCTCTAA 83 >seq956 Length=2258 Score = 280 bits (310), Expect = 2e-73 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| ||||||||||||| ||| | Sbjct 1216 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACACGCGCTTACTAGGCATT-C 1273 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 1274 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 1333 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||||||||| |||||||| | ||||||||||||||||||| Sbjct 1334 ACCCAGACCTTTCGGCCAAGGTGAAGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 1393 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1394 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1442 >seq587 Length=3399 Score = 273 bits (302), Expect = 3e-71 Identities = 201/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 1096 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 1153 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 1154 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 1213 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||||| || |||| || | | ||||||||||||||||||| Sbjct 1214 ACCCGGGCCTTCCGGCCAAGGGAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 1271 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1272 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1320 >seq600 Length=4933 Score = 255 bits (282), Expect = 9e-66 Identities = 197/229 (86%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||| |||||| ||||||||||| ||| | Sbjct 3631 GTACAAAGGGCAGGGACATAATCAACGCATGCT-GATGACATACGCTTACTAGGTATT-C 3688 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||||||||| || ||||| |||||| Sbjct 3689 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCATCACGACCAAGTTTCACAAGATT 3748 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || || | ||||||||| ||||| || | ||||||||||||||||||| Sbjct 3749 ACCC--ATCTTTCAGATAAGGTGATATACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCG 3806 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3807 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 3855 >seq83552 Length=550 Score = 136 bits (150), Expect = 6e-30 Identities = 138/171 (81%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||| | ||||||| ||| |||||| ||||| ||||| ||| | Sbjct 165 GTACAAAGGGCAGGGACGAA-TCAACGCATGCT-GATGACATACGCTT-CTAGGTATT-C 110 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||||||||| || ||||| |||||| Sbjct 109 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCATCACGACCAAGTTTCACAAGATT 50 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCG-TTGAATACATCAGTGTAG 169 |||| | || || | ||||||||| ||| | | || | ||||||||| Sbjct 49 ACCC--ATCTTTCAGATAAGGTGATATACTTGCTGGACTTGGTCAGTGTAG 1 >seq35765 Length=836 Score = 87.8 bits (96), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGA 117 |||| || |||| || |||| ||| |||||||| | | || | ||| | |||| Sbjct 1 TCCTTATTAAAGAGTAATAATTATAATACTCTATCCCTAGTATAATAGAGTTTAATAAGA 60 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| ||||| | || ||||| | ||| || | || ||| ||||||||||| Sbjct 61 TTACCTAGACCTTTTAGCTAAGGTAAAGAACTTATTAGCTCTATTAGTATAGCGCGCGTG 120 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 | ||| |||| ||||||||| || | |||||| ||||| ||| ||||||| Sbjct 121 CAGCCTAGAATATCTAAGGGTATTATAGACCTATTATTACCTTAAACTTC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751050764500