Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq956 188 4e-46 seq4411 172 3e-41 seq957 172 3e-41 seq587 172 3e-41 seq25846 150 1e-34 seq958 129 3e-28 seq5714 82.4 4e-14 seq600 82.4 4e-14 >seq956 Length=2258 Score = 188 bits (208), Expect = 4e-46 Identities = 112/117 (96%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 1744 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAGAAAAAGAACATCGCCC 1803 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1804 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1860 >seq4411 Length=292 Score = 172 bits (190), Expect = 3e-41 Identities = 110/117 (94%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||||||| || Sbjct 58 GAACCCAAA-ACTT-GATTTCTCATAAGGTGCCGAACGAGTCAAAATAATAACATCGTCC 115 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 116 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 172 >seq957 Length=323 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 58 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 116 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 117 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 173 >seq587 Length=3399 Score = 172 bits (190), Expect = 3e-41 Identities = 109/117 (93%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || ||||| ||||||||||||||||||||||||| |||||||||| ||||||||| || Sbjct 1622 GAGCCCAAGCACTTTGATTTCTCGTAAGGTGCCGAACGAGTCAAAAA-ATAACATCGTCC 1680 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1681 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1737 >seq25846 Length=1083 Score = 150 bits (166), Expect = 1e-34 Identities = 98/104 (94%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 14 TTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGG 73 |||||| ||||||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct 14 TTGATT-CTCGTAAGGTGCCGAGCGAGTCAGAAA-AGAACATCGCCCGATCCCTAGTCGG 71 Query 74 CATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 72 CATAGTT-ACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 114 >seq958 Length=494 Score = 129 bits (142), Expect = 3e-28 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 11 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 69 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 70 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 127 >seq5714 Length=244 Score = 82.4 bits (90), Expect = 4e-14 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 28 GGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTT 87 |||||| | | ||||| || | | | | | | |||||| |||||||||||||||| ||| Sbjct 227 GGTGCCAAACAAGTCATTATAA-ATCCTTGTCTGATCCCCAGTCGGCATAGTTTACTGTT 169 Query 88 AAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||||||||||||| || || Sbjct 168 AAGACTACAACGGTATCTGATCGTTTTTGA 139 >seq600 Length=4933 Score = 82.4 bits (90), Expect = 4e-14 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 28 GGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTT 87 |||||| | | ||||| || | | | | | | |||||| |||||||||||||||| ||| Sbjct 4184 GGTGCCAAACAAGTCATTATAA-ATCCTTGTCTGATCCCCAGTCGGCATAGTTTACTGTT 4242 Query 88 AAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||||||||||||| || || Sbjct 4243 AAGACTACAACGGTATCTGATCGTTTTTGA 4272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278059917000