Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq5275 93.3 4e-17 seq28202 86.0 6e-15 >seq5275 Length=552 Score = 93.3 bits (102), Expect = 4e-17 Identities = 139/192 (72%), Gaps = 14/192 (7%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| ||||||||| |||||| |||| Sbjct 514 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGATAAGC 455 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATA- 118 | ||| || ||||| || ||| ||| |||| || |||||||| ||||| || Sbjct 454 TTCGGTGAGGTGGCAAATGACCTGTGACCCGGAGATCTCTGAATGGGGGAACCCACCTAG 395 Query 119 TATTGGAGATATATCATAA-------CGCTAGGCGTT---AGGCGAACGTGGGGAACTGA 168 || | | |||| ||| | |||| ||| |||||||| |||||||||| Sbjct 394 CATAAGCTAGGTATCTTAACCTGAATCCATAGG-GTTAAGAGGCGAACCAGGGGAACTGA 336 Query 169 AACATCTAAGTA 180 |||||||||||| Sbjct 335 AACATCTAAGTA 324 >seq28202 Length=898 Score = 86.0 bits (94), Expect = 6e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 521 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 580 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| ||||| | | | |||||||| || ||||||||||| ||||| Sbjct 581 GTCGGGGAGCTGGCA-ACAAGCTTTGATCCGGCAATGTCCGAATGGGGAAACCC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476198144300