Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3864 132 1e-28 seq14038 82.4 2e-13 seq463 80.6 6e-13 seq36348 73.4 8e-11 >seq3864 Length=859 Score = 132 bits (146), Expect = 1e-28 Identities = 135/181 (75%), Gaps = 25/181 (14%) Strand=Plus/Plus Query 199 AGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTT 258 ||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| Sbjct 1 AGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTGCGACTTCGCACGGACCTGTGTTT 60 Query 259 TTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA----TAGACAGGCA----- 309 || |||||||||||||| ||| |||||||||||| || | | |||| Sbjct 61 TTAGTAAACAGTCGCTTCTCCCTGGTCTCTGCGGCCTCACACGCTCACGCCGGCAAGCAG 120 Query 310 ----------------CCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353 ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 121 CGATCACGCGATCGGCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAA 180 Query 354 C 354 | Sbjct 181 C 181 >seq14038 Length=8189 Score = 82.4 bits (90), Expect = 2e-13 Identities = 256/390 (66%), Gaps = 46/390 (12%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG----TGCCCAAATCG 64 |||||||| | ||| || |||||| ||| | || ||||||||| ||| |||| Sbjct 3756 ATCTTCACTGCCATTCCAGTTTCACTGAGCCAATCATTGAGACAGCTGTTGC----ATCG 3811 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 | | | ||| |||| | | | ||| | ||||| ||||||||||||||||||| | Sbjct 3812 TGAGATCATTCATGCGCGACATCATTTAAATGCCAAGGTATTTCGCTACCTTAGGACCCT 3871 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTT-------AAGTTCACTGCTTCGATTGCTCT 177 |||| || ||||||| || | ||||| || || || | || | | ||| Sbjct 3872 CATAGGTAAGGCCGCCATTAAATGGGGGTTCCTTCAAAACCTCTCCTATTTTAGTCGTCT 3931 Query 178 AACAGATCCCCTTAACCTTCCAGCACCGGGCAG---GCGTCAGCTCCTATACATCGTCTT 234 || | || |||||| ||| || |||||| ||| || || |||||||| | || Sbjct 3932 AAGTAAATCCGTTAACCAGCCATCATTGGGCAGATAGCG-CA-CT-CTATACATTGATTT 3988 Query 235 GCGACTTA-GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCC-------TAT-TC 285 | |||| ||| | ||||||||| |||||||||| || | ||| || Sbjct 3989 ACATCTTACGCAAAGTGCTGTGTTTTAATTAAACAGTCG--TGCAACACCATTTTATGTC 4046 Query 286 TCTGCGGCCT------------GTCA--TAGACAGGCACCCCTTCTCCCTAAGTTACGGG 331 || | ||| ||| | || ||||| |||||||||| |||||||| Sbjct 4047 TCCTCTTCCTAACCCGATATTATTCAGTTGGAATGGCACACCTTCTCCCTCAGTTACGGT 4106 Query 332 GTCATTTTGCCGAGTTCCTTAACAATAGTT 361 |||| ||||||||||||||||| || ||| Sbjct 4107 GTCAATTTGCCGAGTTCCTTAATGATTGTT 4136 >seq463 Length=10439 Score = 80.6 bits (88), Expect = 6e-13 Identities = 106/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| | ||| || | ||||||| |||||||| Sbjct 5111 ATCTGCACTGCTATTCCAATTTCACTGGGTCAATCATAGAGACAGCTGTTGTATCGTTAC 5170 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 5171 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 5229 Query 129 GTTACGGCCGCCGTTTACTGGGGCTT 154 |||| ||||||| || || |||| || Sbjct 5230 GTTAAGGCCGCCTTTAACCGGGGTTT 5255 >seq36348 Length=390 Score = 73.4 bits (80), Expect = 8e-11 Identities = 69/88 (78%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | ||||||| |||||| |||||||||| | || ||||| Sbjct 303 GCATCTTTACTCGTAGTGCAATTTCGCCGAGTTCGCGGTTGAGACAGCGGAGAAGTCGTT 362 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACC 94 ||||| ||||||| |||||||||||||| Sbjct 363 ACGCCATTCGTGCAGGTCGGAACTTACC 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061015692800