Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq587 361 9e-98 seq956 352 5e-95 seq600 334 1e-89 seq3669 190 3e-46 seq35765 176 7e-42 >seq587 Length=3399 Score = 361 bits (400), Expect = 9e-98 Identities = 238/259 (92%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1297 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1298 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 1356 Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||| || | || |||||||||||||||||||||||||||||||||||| |||| Sbjct 1357 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 1415 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1416 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 1475 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 1476 AAAGAGCTCTCAATCTGTC 1494 >seq956 Length=2258 Score = 352 bits (390), Expect = 5e-95 Identities = 233/257 (91%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1361 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1420 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 1421 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 1479 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 |||| ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1480 ACCAGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 1539 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1540 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCTGAAAAATCAAGAA 1599 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 1600 AGAGCTCTCAATCTGTC 1616 >seq600 Length=4933 Score = 334 bits (370), Expect = 1e-89 Identities = 229/258 (89%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3773 TACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 3832 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||| ||||||||| || | | ||||||||||||||||| |||| Sbjct 3833 ACCTGTTATTGCCTCCAACTTCCATCAACTAAACGTTGATAGTCCCTCTAAGAAGTCAGC 3892 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| |||||| | || |||||||||||| ||||||||||||||||||||||||| Sbjct 3893 AGCCAGCCATAGCCAGCTGGACTATTTAGCAGGAGAAGGTCTCGTTCGTTATCGGAATTA 3952 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| Sbjct 3953 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAAATCAAGA 4012 Query 241 AAGAGCTATCAATCTGTC 258 || ||||||||||||||| Sbjct 4013 AAAAGCTATCAATCTGTC 4030 >seq3669 Length=474 Score = 190 bits (210), Expect = 3e-46 Identities = 158/192 (82%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 133 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | |||| | | |||||||||||||||||| ||| Sbjct 132 CCTGTTATTGCCTCAAACTTCCGTGGCCTGGGCGGCCATAGTCCCTCTAAGAAGCTGGCC 73 Query 122 ACCAACCAT--AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | || | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 72 GTGGAGGGTTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 13 Query 180 AACCAGACAAAT 191 |||||||||||| Sbjct 12 AACCAGACAAAT 1 >seq35765 Length=836 Score = 176 bits (194), Expect = 7e-42 Identities = 190/250 (76%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 10 GCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| | ||| |||||||||||| ||| |||| ||||||||| || | |||||| |||| Sbjct 98 GCTCTATTAGTATAGCGCGCGTGCAGCCTAGAATATCTAAGGGTATTATAGACCTATTAT 157 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 | ||| ||||||| ||| ||| |||| |||||||||||||||||||| || || | | | Sbjct 158 TACCTTAAACTTCTATTAGCTT-AAGCTAATAGTCCCTCTAAGAAGCCGGCGACTAGCTA 216 Query 130 ----TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | | ||||||||| |||||||||||| || |||| |||||| || Sbjct 217 AAGCTAGCCTA----GCTATTTAGTAGGTTAAGGTCTTATTTATTATTATAATTAAGTAG 272 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 | |||| |||| || ||||||||| || || || || ||| | | ||| ||||||||| Sbjct 273 ATAAATTACTCTACTAACTAAGAATAGCTATATACTACTACCTAAAAAATTAAGAAAGAG 332 Query 246 CTATCAATCT 255 || | ||||| Sbjct 333 CTCTTAATCT 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795794214300