Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq559 466 3e-129 seq34223 255 1e-65 seq685 251 1e-64 seq6973 250 4e-64 seq1014 244 2e-62 seq234 199 7e-49 seq872 197 2e-48 seq600 165 1e-38 seq48730 138 2e-30 seq50805 98.7 2e-18 >seq559 Length=340 Score = 466 bits (516), Expect = 3e-129 Identities = 260/261 (99%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 60 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 120 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 180 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 240 Query 275 ACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||| Sbjct 241 ACTTTCATGGTTTGTATTCAC 261 >seq34223 Length=1055 Score = 255 bits (282), Expect = 1e-65 Identities = 234/293 (80%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGA-ATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||||| ||||| ||| ||| | ||| || ||||||||||||||||||| ||| Sbjct 932 TACTAAGCGGTTATTACTATTAGGGTAA-GGTTATTAGTAGGGTAAAACTAACCTATCTT 874 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 || | ||||||||| |||| | |||||||||||| ||| || |||| ||||||||| Sbjct 873 ATAATAGTCTAAACCTAGCTTATATTCCCTATTAGTAGGTAAATAATCTAACGCTTACTA 814 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||| ||| |||| ||||||||||| | || |||||| |||||| || | ||| Sbjct 813 AATTCTACTTTAGTATAATAGGAAGAGCTAATATTAAAGGATTAAAAAGTAATATTACTA 754 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 | ||||||| ||| | | |||| |||||||||| | ||||||||||| | |||||||||| Sbjct 753 TAAACGCTTAGCTACTATAAGCTAGTTATCCCTATAGTAACTTTTCTAGTACCTCTAGCC 694 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | |||||| |||||||||||||| |||||| | ||||| || |||| |||| Sbjct 693 TTAAATTTTAAGGGACTAAAGGATTAATAGGCTATACTTTTATAGTTTATATT 641 >seq685 Length=1596 Score = 251 bits (278), Expect = 1e-64 Identities = 151/155 (97%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 1444 CATCAGTAGGGTAAAACTA-CCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 1502 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1503 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT-GGAAGAGCCGAC 1561 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTAT-GAACG 185 ||||||||||||||||||||||||||||| ||||| Sbjct 1562 ATCGAAGGATCAAAAAGCAACGTCGCTATCGAACG 1596 >seq6973 Length=320 Score = 250 bits (276), Expect = 4e-64 Identities = 163/176 (93%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| Sbjct 3 CGAATTCTGCTTCGGTATGATAGGA-GAGCCG-CATCGAAGGATCAAA--GCAACGTCGC 58 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 59 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAG 118 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 119 CTTCAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 174 >seq1014 Length=597 Score = 244 bits (270), Expect = 2e-62 Identities = 154/165 (93%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| |||| | || || ||||||||||||||||||||||||||| Sbjct 165 TACTAAGTTGAATTACTATTGCGATAACTTTCCATCAGTAGGGTAAAACTAACCTGTCTC 106 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 46 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 1 >seq234 Length=1694 Score = 199 bits (220), Expect = 7e-49 Identities = 113/115 (98%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 1139 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 1140 ATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 1194 Score = 140 bits (154), Expect = 6e-31 Identities = 87/92 (95%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 602 TACTAAGCTGAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 660 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 661 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 692 >seq872 Length=1357 Score = 197 bits (218), Expect = 2e-48 Identities = 137/154 (89%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||| Sbjct 1205 TACTAGGTTGAATTACTATTGCGAC-ACTATCATCAGTAGGGTAAAACTAACCTGTCTCA 1263 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1264 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTGA 1323 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||||||||| ||||||||||||||||||||| Sbjct 1324 ATTCTGCTTCACAATGATAGGAAGAGCCGACATC 1357 >seq600 Length=4933 Score = 165 bits (182), Expect = 1e-38 Identities = 144/164 (88%), Gaps = 14/164 (9%) Strand=Plus/Plus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| Sbjct 1 ATAGGA-GAGCCGACATCGA-GGATCAAAA-GCA-CGTCGCTATGAACGCTTGGCTGCCA 56 Query 197 CAAGCCAGTTAT-CCCTGTGGTAACTTTTCTGGCACCT-CTAGCCTCAAATTTCGAGGGA 254 | |||||||||| |||||||| ||| |||||||||||| ||||| | || ||| | ||| Sbjct 57 C-AGCCAGTTATCCCCTGTGG-AAC-TTTCTGGCACCTACTAGCTTTAA--TTCTAAGGA 111 Query 255 -CTAAAGGATCGATAGGCCA--CACTTTCATGGTTTGTATTCAC 295 ||||||||||||| ||||| ||||||||||||||||||||| Sbjct 112 CCTAAAGGATCGATTGGCCAACGACTTTCATGGTTTGTATTCAC 155 >seq48730 Length=1330 Score = 138 bits (152), Expect = 2e-30 Identities = 85/88 (97%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTC-TCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 124 CATCA-TAGGGTAAAACTAACCTGTCGTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 182 Query 91 TTAGTGGGTGAACAATCCAACGCTTACC 118 |||||||||||||||||||||||||||| Sbjct 183 TTAGTGGGTGAACAATCCAACGCTTACC 210 >seq50805 Length=828 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| | |||| ||| ||| | ||| || ||||||||||||||||||| ||| | Sbjct 113 TACTAAGTAGTATTATAATTAGGGTAA-GGTTATTAGTAGGGTAAAACTAACCTATCTTA 55 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 | | ||||||||| |||| || |||||||||||| ||| || |||| |||||| Sbjct 54 TAATAGTCTAAACCTAGCTTACATTCCCTATTAGTAGGTAAATAATCTAACGCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853286716800