Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq6010 506 4e-141 seq39191 271 2e-70 seq37348 242 8e-62 seq4371 201 2e-49 seq6009 178 3e-42 seq44237 149 1e-33 seq52554 147 5e-33 >seq6010 Length=1125 Score = 506 bits (560), Expect = 4e-141 Identities = 334/367 (91%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| | |||| | ||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1063 CTTTACGACCCGAGGTCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 1006 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 946 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 945 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTAGGCCTTTACCCTA 886 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||||||||||||||| |||||| ||| |||||| ||||| ||| Sbjct 885 CCAACTAGCTAATCCGACCTAGGCTCATCTAATAGCGTGAGGTCCGAAGATCCCCCACTT 826 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 |||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| || Sbjct 825 TCTCCCGTAGGACGTATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACTAG 766 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360 ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 765 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCGAGGAGCAAGCTCCTCTCAT 706 Query 361 CCGCTCG 367 ||||||| Sbjct 705 CCGCTCG 699 >seq39191 Length=1123 Score = 271 bits (300), Expect = 2e-70 Identities = 262/335 (78%), Gaps = 16/335 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||||| ||||||||||||| ||||| Sbjct 41 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCATTG-CTGGATCAGGCTTGCGCCC 98 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 99 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 158 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||||||| |||||| ||||||||| || Sbjct 159 TGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCGTCGGCTTGGTAGGCCATTACCCCA 218 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||| ||||||| || ||||||| | | ||| || ||| Sbjct 219 CCAACTACCTAATCCTACGCGGGCTCAT-------CCCTCGGCGATAA-------ATCTT 264 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 | ||| || ||| ||||||||| |||||| | |||||||| || | | Sbjct 265 TGGTCCGAAGACATTATAAGGTATTAGCTCAAGTTTCCAACTGTTATCCCGAACCAAAGG 324 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||||| | || |||| ||||||| |||| || Sbjct 325 GCAGATTCCCACGCGTTACGCACCCGTGCGCCACT 359 >seq37348 Length=1626 Score = 242 bits (268), Expect = 8e-62 Identities = 205/246 (83%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAGACC-AGTTACGGATCGTCGCCTT-GGTGAG 169 ||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| | Sbjct 1 CAGTTCCAGTGTGGCTGATCATCCTCTCAGACCTAGCTACGGATCGTCGCCTTAGGTGGG 60 Query 170 CCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAG 229 || ||||| | |||||||||||||||||| | ||||||||| |||| | |||||||| Sbjct 61 CCTTTACCCCGCCAACTAGCTAATCCGACATCGGCTCATCTATCCGCGCGAAGCCCGAAG 120 Query 230 GTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCC 289 |||| | |||||| ||| ||| |||||||||||||||||| |||||| ||||||||| Sbjct 121 GTCCTCCGCTTTCACCCTAAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCC 180 Query 290 CCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAA--GAGA-AG 346 ||||| | ||| ||||||| | | ||| |||||||||||||| ||| | | ||| || Sbjct 181 CCCACGA-AAGGTAGATTCCGATGTATTCCTCACCCGTCCGCCACTCGCCACCCAGAGAG 239 Query 347 CAAGCT 352 |||||| Sbjct 240 CAAGCT 245 >seq4371 Length=734 Score = 201 bits (222), Expect = 2e-49 Identities = 164/194 (85%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 1 CTTTACAAT-CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCC 59 |||||| || ||||| |||||| ||| |||||||||| |||||| |||||||| |||| Sbjct 299 CTTTACGATTCCGAAAACCTTCATTCCTGCACGCGGCAT-GGCTGGTTCAGGCTTCCGCC 357 Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 ||||| |||||||||| ||| ||||||||||||||||||||| |||||||||||| ||| Sbjct 358 CATTGACCAATATTCCTTACT-CTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCA 416 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 ||||| | ||||||||||||| | || |||||||||||||| |||| |||||| Sbjct 417 GTGTGGGGG-TCATCCTCTCAGATCCCCTAAACATCGTCGCCTTGGTAAGCCGTTACCTT 475 Query 180 ACCAACTAGCTAAT 193 |||||||||||||| Sbjct 476 ACCAACTAGCTAAT 489 >seq6009 Length=607 Score = 178 bits (196), Expect = 3e-42 Identities = 127/138 (92%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| | |||| | ||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 134 CTTTACGACCCGAGG-CCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTT-CGCCC 79 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA-CCGTGTCTCAGTTCCA 119 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 78 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGATCCGTGTCTCAGTTCCA 19 Query 120 GTGTGACTGATC-ATCCT 136 ||||| ||| || ||||| Sbjct 18 GTGTGGCTGGTCAATCCT 1 >seq44237 Length=356 Score = 149 bits (164), Expect = 1e-33 Identities = 108/121 (89%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| |||||||||||||||| Sbjct 118 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTTCGCCCA 61 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTGTGCAATATTCCC-ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 2 Query 122 G 122 | Sbjct 1 G 1 >seq52554 Length=343 Score = 147 bits (162), Expect = 5e-33 Identities = 193/261 (74%), Gaps = 20/261 (8%) Strand=Plus/Plus Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 |||||| |||||||| | ||||| |||||||| | | |||| ||||||||||||||||| Sbjct 1 CTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTACGCATCGTCGCCTTGGTGAG 60 Query 170 CCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAG---GC-CC 225 || ||||| ||||||||||||||| || | |||| |||| || | || || || Sbjct 61 CCGTTACCCCACCAACTAGCTAATGCGCCGCAGGCCCATCCTTCAGTGACAGATTGCTCC 120 Query 226 GAAGGTCCCCTGCTTTCTCCCGT-------AGGACGTATGCGGTATTAGCGTCCGTTTCC 278 | | | | | ||||||| | || | |||| |||||||||| |||||||| Sbjct 121 G--TCTTTCGTTC-TTCTCCCATGCAGAAAAGAAAGTATCCGGTATTAGCTACCGTTTCC 177 Query 279 GAACGTTATCCCCCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGC--- 334 | |||||||| ||| ||||| || |||| | ||||||||||||||||||| Sbjct 178 GGTAGTTATCCCAGGCTAAAGGGCAGGTTGCCTACGTGTTACTCACCCGTCCGCCGCTAA 237 Query 335 -TCTCAAGAGAAGCAAGCTTC 354 |||||||| ||||||||||| Sbjct 238 GTCTCAAGA-AAGCAAGCTTC 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070603184000