Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001286.1 Length=411 Score E Sequences producing significant alignments: (Bits) Value seq11816 407 4e-111 seq54429 96.9 8e-18 >seq11816 Length=3145 Score = 407 bits (450), Expect = 4e-111 Identities = 337/411 (82%), Gaps = 3/411 (1%) Strand=Plus/Minus Query 1 CGAGGAACGGCCCGTCATAGCCGTGGCAGAACTGCAGGACGTGGCGATCAGCCGAGCGTG 60 ||||||| || ||||| |||||||| ||||||||||| || | | || || || || | Sbjct 2161 CGAGGAAGGGACCGTCGTAGCCGTGACAGAACTGCAGCACCCGCGGTTCGGCGGAACGCG 2102 Query 61 TCATAAGGGTCCACGCCGTCCTTGACCACCAGGATGTCTTCCATGATCAGGTATTGCAGG 120 ||||| | ||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2101 TCATACG---CCAGCCCCTCCTTGACCACCAGGATGTCTTCCATGATCAGGTACTGCAGA 2045 Query 121 TCGGAGCCAAAGAACATGTCCAGCGCGTCTTTCGGCGAGCAGATCATCGCTTCGCCACGG 180 || ||||| |||||||||| ||| ||||| | |||||||||| ||| | ||| || ||| Sbjct 2044 TCCGAGCCGAAGAACATGTTCAGGGCGTCGGTGGGCGAGCAGACCATGGGTTCACCGCGG 1985 Query 181 CGGTTGAGCGAGGTGTTCAGGGACACGCCGTTGCCGGTCAGCACTTCCAGCTCTTTCATC 240 ||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||| Sbjct 1984 CGGTTGAGCGAGGTGTTGAGGGACACGCCGTTGCCGGTGAGCTTTTCCAGCTCGACCATG 1925 Query 241 ATGTCGTAGTAGCGCGGGTTGTATTCGCGCTTGAGCACCTGGGCGCGGGAGGTGCCATCT 300 | |||||| ||||||| |||| ||||| ||||||||||||||||||||||| ||| Sbjct 1924 AGGTCGTACCAGCGCGGATTGTGCCGGCGCTCCAGCACCTGGGCGCGGGAGGTGCCGTCT 1865 Query 301 TCATGGACCACTTCCGGCACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTC 360 || |||||||| || || || ||| ||||||||||||| || || ||||| |||||| Sbjct 1864 TCGTGGACCACCTCGGGTACCCGGCTCTTCCACTCTTCGTTGACCTCGAAGGTAAAGGTC 1805 Query 361 ATGAACGGCGCCGGGTGATCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411 ||||| |||| || || |||||||||| ||||||||| |||||||||||| Sbjct 1804 ATGAAGGGCGAGGGATGGTCGACCTTGAGCATCTGCGGTGCCACGGTGTCG 1754 >seq54429 Length=773 Score = 96.9 bits (106), Expect = 8e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 319 ACGCGGGTCTTCCACTCTTCCGACACTTCAAAGGTGAAGGTCATGAACGGCGCCGGGTGA 378 || ||| ||||||||||||| || || ||||| ||||||||||| |||| || || Sbjct 772 ACCCGGCTCTTCCACTCTTCGTTGACCTCGAAGGTAAAGGTCATGAAGGGCGAGGGATGG 713 Query 379 TCGACCTTGATCATCTGCGGGGCCACGGTGTCG 411 |||||||||| ||||||||| |||||||||||| Sbjct 712 TCGACCTTGAGCATCTGCGGCGCCACGGTGTCG 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1211219721600