Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001377.1 Length=151 Score E Sequences producing significant alignments: (Bits) Value seq63213 165 6e-39 seq3908 163 2e-38 seq128247 125 6e-27 seq63978 111 1e-22 >seq63213 Length=612 Score = 165 bits (182), Expect = 6e-39 Identities = 127/151 (84%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 1 CGAAAATTGCTGAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTAT 60 |||| || | ||||| ||||||||| |||||||||||||| |||| |||| || Sbjct 102 CGAACATCGTCGAAGACGCCATCGCCACCGTGCGCGCCCAGGTGGGCAGCAACAAGGTGC 161 Query 61 TGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCA 120 |||| ||||| ||||||||||| ||||||||||| || ||||| |||||||||||||||| Sbjct 162 TGCTGGGCCTCTCCGGCGGCGTCGACTCCTCGGTGGTCGCGGCCCTGCTGCACAAGGCCA 221 Query 121 TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 |||||||||| ||||||||||| || ||||| Sbjct 222 TCGGCGACCAGCTGACCTGCGTCTTCGTCGA 252 >seq3908 Length=422 Score = 163 bits (180), Expect = 2e-38 Identities = 121/140 (86%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 12 GAAGATGCCATCGCCCAAGTGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCTG 71 || || ||||||||| | ||||||||||||||||||| | |||||| |||| ||||| Sbjct 255 GAGGACGCCATCGCC-AGGTGCGCGCCCAGGTCGGCAGCGCCAACGTGCTGCTGGGCCTC 197 Query 72 TCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAAGGCCATCGGCGACCAA 131 ||||||||||| |||||||| || || ||||| |||||||||||||||||||||||||| Sbjct 196 TCCGGCGGCGTCGACTCCTCCGTGGTCGCGGCCCTGCTGCACAAGGCCATCGGCGACCAG 137 Query 132 CTGACCTGCGTGTTTGTCGA 151 ||||||||||| || ||||| Sbjct 136 CTGACCTGCGTCTTCGTCGA 117 >seq128247 Length=592 Score = 125 bits (138), Expect = 6e-27 Identities = 115/143 (80%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 12 GAAGATGCCATCGCCCAAG-TGCGCGCCCAGGTCGGCACTGACAACGTATTGCTTGGCCT 70 || || |||||||||| || |||| |||||||||||| | |||||| |||| ||||| Sbjct 503 GAGGACGCCATCGCCCCAGGTGCGTGCCCAGGTCGGCGACGCCAACGTGCTGCTCGGCCT 444 Query 71 GTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCACAA--GGCCATCGGCGAC 128 |||||||| || || || ||||| || ||||| ||||||||||| | | ||||||||| Sbjct 443 CTCCGGCGGTGTGGATTCGTCGGTGGTCGCGGCGCTGCTGCACAACGGACGATCGGCGAC 384 Query 129 CAACTGACCTGCGTGTTTGTCGA 151 || |||||||| || || ||||| Sbjct 383 CAGCTGACCTGGGTCTTCGTCGA 361 >seq63978 Length=808 Score = 111 bits (122), Expect = 1e-22 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 53 CAACGTATTGCTTGGCCTGTCCGGCGGCGTTGACTCCTCGGTTGTAGCGGCACTGCTGCA 112 |||||| |||| ||||| ||||||||||| |||||||| || || || || |||||||| Sbjct 803 CAACGTGCTGCTGGGCCTCTCCGGCGGCGTCGACTCCTCCGTGGTCGCAGC-CTGCTGCA 745 Query 113 CAAGGCCA-TCGGCGACCAACTGACCTGCGTGTTTGTCGA 151 |||||||| |||||||||| ||||||||||| || ||||| Sbjct 744 CAAGGCCATTCGGCGACCAGCTGACCTGCGTCTTCGTCGA 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386727011000