Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq42745 149 7e-34 seq35345 89.7 5e-16 >seq42745 Length=312 Score = 149 bits (164), Expect = 7e-34 Identities = 117/140 (84%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 CGACCTTTTTGCTCGCCTTCAAGCGCCGGCCGGCGTTGTTGATCGCCAGCTCCGCCAGGG 60 ||||||| |||| |||||| | ||| ||||||||||||||||| |||||||| || | Sbjct 173 CGACCTTCTTGCCCGCCTTGAGGCGGCGGCCGGCGTTGTTGATGGCCAGCTCGGCGATCT 232 Query 61 CCAGGCCCAGTTCCGGATGCTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAG 120 | | |||||||||||||| | |||||||| ||||||||||||||||||||||| || | Sbjct 233 GCTGACCCAGTTCCGGATGGGCATTGAGCCAGAGGCTGAAGGCGTCCTTGACCACCCCGG 292 Query 121 AGACAAACGCCGCTGCCTCG 140 |||||| ||||| |||||| Sbjct 293 CGACAAAGGCCGCGGCCTCG 312 >seq35345 Length=3105 Score = 89.7 bits (98), Expect = 5e-16 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 80 CTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTC 139 || ||| ||||||||||||||||| || ||||||||| | || || || || || || Sbjct 970 CTGGTTCAGCCACAGGCTGAAGGCATCTTTGACCACGGCTGACACGAAGGCGGCGCACTG 1029 Query 140 GCGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTTCATCG 198 ||| || || | |||||| ||||| || |||| || || || |||||||| |||| || Sbjct 1030 GCGTGAAGATAAGCGCTCTTTGGTTTGACCGGCAAACTGTGGATCCTGCATTTTCACCG 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533725436900