Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq956 178 2e-42 seq600 176 5e-42 seq587 159 4e-37 seq958 80.6 3e-13 >seq956 Length=2258 Score = 178 bits (196), Expect = 2e-42 Identities = 171/213 (80%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 2005 CTAGAAACCAACAAAATAGGACCGCACGTCCTATTCTATTATTCCATGCTAACGTATTCG 2064 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||| ||| | || Sbjct 2065 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGG-TCCCCAACA 2123 Query 126 C-ACCAATGAAG-GCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| ||||| |||| || || ||| ||| ||| | || ||||| ||| Sbjct 2124 CGCCCAGTGAAGAGCAT-GAGGTTCTCCAGAAGGAAGGCCCGGCCGGACAAGTACACGCG 2182 Query 184 GTGAGGCGGACCATAGCACCCAGCCCGAGTTTC 216 |||||||||||| | || |||| || |||||| Sbjct 2183 GTGAGGCGGACC-TGCCAGCCAGACCAAGTTTC 2214 >seq600 Length=4933 Score = 176 bits (194), Expect = 5e-42 Identities = 134/156 (86%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| Sbjct 4416 CTAGAAACCAACAAAATAGAATCACACATCCTATTTTATTATTCCATGCTAATGTATTCA 4475 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | | Sbjct 4476 GGCATAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCTCCAA 4535 Query 126 CA-CCAATGAAG-GCATACGGGCTCACCAAGAGGTA 159 || ||| | ||| |||| | | ||||||||||||| Sbjct 4536 CACCCAGTAAAGTGCATTAGAGTTCACCAAGAGGTA 4571 >seq587 Length=3399 Score = 159 bits (176), Expect = 4e-37 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1881 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCG 1940 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 1941 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 2000 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| |||| ||||| || ||| || | ||| | || |||||| ||| Sbjct 2001 CACCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTACACGCG 2060 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 2061 GTGAGGCGGACC 2072 >seq958 Length=494 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 278 CCAACACAATAGGATCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 336 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 337 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594448690200