Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq9903 224 2e-56 seq67692 212 1e-52 >seq9903 Length=5771 Score = 224 bits (248), Expect = 2e-56 Identities = 229/299 (77%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67 || ||| |||||||||||||||| || |||||||| || |||||||| | | || || Sbjct 4048 GACCACGTGCTGGAAATCGCCGTGGATGACGAAGAAATCGTCCAGCGCCTGTCCGGTCGC 4107 Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127 ||||| || | ||||| ||||| || |||| || |||||||||| ||||| || Sbjct 4108 CGCGTGCACCCGGGTTCGGGTCGCGTCTATCACATCGAACACAATCCGCCGAAGGTCGCC 4167 Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187 | || ||||| |||||||||| |||||||||||| | |||||| ||||| ||| Sbjct 4168 GACACCGACGACCTGACCGGCGAGCCGCTGGTACAGCGCGAAGACGACCGCGAAGCCACC 4227 Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247 |||| | || ||| | || ||||| || ||||||||||||||||||||||||||| Sbjct 4228 ATTCGCAAGCGTCTGGACCTCTATCATTCCCAGACCAAGCCGCTGGTGGACTTCTACCAG 4287 Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306 ||||||| || |||||||||| ||| |||| ||||| | | || ||||| || ||||| Sbjct 4288 AAGCTGGGCGCCGCCCAGGGCACGCCGAAGTGCAGCCGCATCGAGGGCGTGGGTTCGGT 4346 >seq67692 Length=1189 Score = 212 bits (234), Expect = 1e-52 Identities = 223/292 (76%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 15 TGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGTCGCGTAC 74 |||||||||||||||| |||||||| || || || ||||||||| | ||||||||||| | Sbjct 339 TGCTGGAAATCGCCGTGGAAGACGAGGAAATCGTTCAGCGTATTTCCGGCCGTCGCGTTC 398 Query 75 AAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGG 134 | || ||||| || || || |||||| | || |||| | || || || || ||||||| Sbjct 399 ATGAGGCCTCCGGTCGTGTCTACCACGTCATCCACAACGCACCGAAAGTGGCTGGCAAGG 458 Query 135 ACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTC 194 | || | ||| |||||||| ||| | ||||| ||| |||| |||||| ||||| || Sbjct 459 ATGACGAGACTGGCGAAGA-CTGATCCAGCGTCCGGATGACAGCGAAGAGACCGTGCGCA 517 Query 195 ACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGG 254 | || ||| | | ||||| ||| |||||||||||||| ||||||||| ||||| Sbjct 518 AGCGTCTGGCGCTCTACCACGAGCAGACCAAGCCGCTGGTCGACTTCTACTCCAAGCTCT 577 Query 255 CTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306 |||| ||| ||| |||||||| |||| | || |||||||| || ||||| Sbjct 578 CTGCCGCCACTGGCTCGCCCAAGTGCAGCAAGGTGGAAGGCGTGGGTTCGGT 629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898028342400