Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001745.1 Length=273 Score E Sequences producing significant alignments: (Bits) Value seq18081 158 2e-36 seq57309 102 1e-19 seq25790 98.7 2e-18 >seq18081 Length=1062 Score = 158 bits (174), Expect = 2e-36 Identities = 174/232 (75%), Gaps = 15/232 (6%) Strand=Plus/Plus Query 57 AGATCCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTG 116 |||||||| |||||||||||||| |||||||| ||||| || | ||||||||||| || Sbjct 257 AGATCCAGCCGCGTGCCGGCATAGACCACCGGCGCGCCGGGCTTGGCGGCATCCAGGGTA 316 Query 117 CGCGCGGTGGCACAGCCGGTGAGTTGCAG---CGCCATCAAGAGCA---------GCAGT 164 ||||| ||||| |||||| ||| ||| ||| ||| |||| ||| Sbjct 317 CGCGCCGTGGCGCAGCCGCCGAGGGCCAGGATGGCCGTCAGCAGCAGGCCGAGGCGCATG 376 Query 165 GCTTTATTCATCGCCGC---CCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGG 221 || || ||||||| || |||| || ||||| ||||| |||||||||||||||||||| Sbjct 377 GCCCTAGTCATCGCTGCTGGCCAGATGATGCTCGCCCCAGCGTGGCAGCATGTCCTGGGG 436 Query 222 AATGTTCAACAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATCG 273 ||| || |||||| |||||||||||||| ||||| | ||||| ||| Sbjct 437 GATGCCCAGGGTGTTGAGGATGCGCGCCACCACGAAGTCGATGAGGTCGTCG 488 >seq57309 Length=274 Score = 102 bits (112), Expect = 1e-19 Identities = 105/135 (78%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 2 CGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGA-- 59 ||| ||| |||| || | ||| | || | ||| || ||||| | | ||||| ||| Sbjct 132 CGGTGCCTCGGCGCCGAAGCGCTCCCGAGCGCAGCAGCCGCCCTGCAG-GGGCATAGAGA 190 Query 60 TCCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGC 119 ||||| |||||||||||||| |||||||| ||||| || | ||||||||||| |||||| Sbjct 191 TCCAGCCGCGTGCCGGCATAGACCACCGGCGCGCCGGGCTTGGCGGCATCCAGGGTGCGC 250 Query 120 GCGGTGGCACAGCCG 134 || ||||| |||||| Sbjct 251 GCTGTGGCGCAGCCG 265 >seq25790 Length=3949 Score = 98.7 bits (108), Expect = 2e-18 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 177 GCCGCCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTT 236 |||| |||||| || || ||||| || ||||||||||||||||| ||| || ||| Sbjct 78 GCCGGACAGGTGATGTTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGCCCAGGGTGTT 137 Query 237 GAGAATGCGCGCCACCACAAAGTCCACCAGGTCATCG 273 ||| |||||||||||||| |||||||||||||| ||| Sbjct 138 GAGGATGCGCGCCACCACGAAGTCCACCAGGTCGTCG 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 773422489400