Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3864 228 2e-57 seq32551 167 5e-39 seq42980 111 4e-22 seq38941 89.7 1e-15 seq52867 82.4 2e-13 seq39713 73.4 9e-11 >seq3864 Length=859 Score = 228 bits (252), Expect = 2e-57 Identities = 171/201 (85%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| ||||||||| || ||| || || Sbjct 575 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCGGATGAACCTGGCC 634 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||| Sbjct 635 CTGGAACCCTTGGTCAATCGGCGGACGGGGTTCTCACCCGTCATTCGCTACTCATGCCTG 694 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 ||||||||||||| | | ||||| || |||| | || |||||||| ||||||| Sbjct 695 CATTCTCACTCGCGTGCAGTCCACGACTGGATCACTCCGCCGCTTCACCCGCCACACGAC 754 Query 181 GCTCCCCTACCCAACCACACA 201 ||||||||||||| ||||||| Sbjct 755 GCTCCCCTACCCATCCACACA 775 >seq32551 Length=639 Score = 167 bits (184), Expect = 5e-39 Identities = 241/334 (72%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| |||| |||||| |||||| ||| || |||| | |||| ||||| | Sbjct 333 CGACTACGCGTGTCCGCCTCGTCTTAGGGGCCGGCTAACCCTGCTCAGATTAACTTTAAG 274 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | ||||||||||| |||||| | | || ||| || | || |||||||| | Sbjct 273 CAGGAACCCTTGGTCTTTCGGCGAGGGAGTCTCTCACTCCCTTTATCGTTACTCATGTCA 214 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGC-TTCACC-ACTGACAC 177 ||||| |||| | | ||||| || | |||| | | || ||||| ||| || Sbjct 213 ACATTCGCACTTCCGATATCTCCAGCAGCCC-TCACGGGTCCGCCTTCACAGACTTACGG 155 Query 178 GACGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||| ||||| || || | |||| || ||||||||| | || ||| ||||| Sbjct 154 AACGCTCCGCTACCACACAACTTACGTTGTATCCTCAGCTTCGGTGCATGGCTTTAGCCC 95 Query 235 CGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCTTTCA 289 || |||||| ||||||| | | ||| |||||||||||| |||||| ||||| | Sbjct 94 CGTTACATTTTCGGCGCAAAGACCCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTTAA 35 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||||||||| ||||||||||||||||||| Sbjct 34 AGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGT 1 >seq42980 Length=269 Score = 111 bits (122), Expect = 4e-22 Identities = 82/93 (88%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 305 AAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC-CACTTA 363 |||||||| |||||||||||| |||||| |||||||||||||||| | ||| ||||| Sbjct 269 AAGCCAACATCCTGGTTGTCTGTGCAACTTCACATCCTTTCCCACTTAA-CACACACTTG 211 Query 364 GGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||| |||||||||||| |||||||||||||||| Sbjct 210 GGGACCTTAGCTGATGGTCTGGGCTGTTTCCCT 178 >seq38941 Length=246 Score = 89.7 bits (98), Expect = 1e-15 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 10 CTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAACCC 69 || |||||||||||||||| ||||||| |||| | | ||| | | | | | ||||||| Sbjct 246 CTTTCGGCCTCGCCTTAGGTCCCGACTTACCCTGAGAGGACGAGCCTTCCTCAGGAACCC 187 Query 70 TTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTGCATTCTCAC 129 || | | |||||||| ||||| ||| || || ||||||| || |||||||||| Sbjct 186 TTAGGTTTTCGGCGGATCAGATTCTCACTGATCTTTCGTTACTCATACCGGCATTCTCAC 127 Query 130 TCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTCCCCTA 189 | | || |||| ||| | | || | ||||| | | | ||||||||||| Sbjct 126 TTGAATTGTGTCCAGCACTC-CTTACGGTATACCTTCAACCTCAATTCAACGCTCCCCTA 68 Query 190 CCC---AACCACA-CAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTAT 245 ||| | || | || |||| |||||||| || | || ||||||| |||||| | Sbjct 67 CCCCTGATGCAAAGCATCAAGCCATAGCTTCGGTGG-TGTGTTTAGCCCCGTTACATTTT 9 Query 246 CGGCGC 251 |||||| Sbjct 8 CGGCGC 3 >seq52867 Length=861 Score = 82.4 bits (90), Expect = 2e-13 Identities = 94/124 (76%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCT 317 || ||| |||||||| ||||||||||||| || || ||||||||||||||||||| |||| Sbjct 124 CTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCT 65 Query 318 GGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCT 375 | ||||| ||| | || || || | | ||| | | | || ||| |||||||| Sbjct 64 AGCTGTCTGTGCAGCCGGACCTCGTTAGTTCAACTTAATAGTAATTTGGGGACCTTAGCT 5 Query 376 GATG 379 |||| Sbjct 4 GATG 1 >seq39713 Length=308 Score = 73.4 bits (80), Expect = 9e-11 Identities = 74/94 (79%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 305 AAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAG 364 ||||||||||||||||||| | | | |||||| |||||| ||| || | |||| | Sbjct 303 AAGCCAACCTCCTGGTTGTTTTGGGATTCCCACATGCTTTCC-ACTTAGACGTGACTT-G 246 Query 365 GGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || ||||||||| | || ||||||||||||||| Sbjct 245 GGACCTTAGCTGTAGGTCAGGGCTGTTTCCCTCT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176065587200