Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq956 282 4e-74 seq587 264 1e-68 seq600 214 2e-53 seq958 127 2e-27 seq35765 123 3e-26 seq957 109 6e-22 >seq956 Length=2258 Score = 282 bits (312), Expect = 4e-74 Identities = 178/191 (93%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2118 GGGACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 2059 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 | ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 2058 CGTTAGCATGGAATAATAGAATAGGACGTGCGGTCCTATTTTGTTGGTTTCTAGGACCG- 2000 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 1999 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 1940 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 1939 TTGGATTTATT 1929 >seq587 Length=3399 Score = 264 bits (292), Expect = 1e-68 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 1994 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 1935 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1934 CATTAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 1876 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 1875 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 1816 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 1815 TTGGATTTATT 1805 >seq600 Length=4933 Score = 214 bits (236), Expect = 2e-53 Identities = 162/190 (85%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| Sbjct 4529 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCCTGAATA 4470 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| ||||||| ||| | ||||||||||| ||||||||||| Sbjct 4469 CATTAGCATGGAATAATAAAATAGGATGTGTGATTCTATTTTGTTGGTTTCTAGGA-TTA 4411 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||||||||||| || ||| ||||| | ||||| || |||| ||||||||||| Sbjct 4410 CCGTAATGATAAATAGGGTCAGTTGGGGGCATTTGTATTACATCGTCAGAGGTGAAATTC 4351 Query 181 TTGGATTTAT 190 ||||||| || Sbjct 4350 TTGGATTGAT 4341 >seq958 Length=494 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 374 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 315 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 314 GGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 257 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 256 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 197 Query 190 T 190 | Sbjct 196 T 196 >seq35765 Length=836 Score = 123 bits (136), Expect = 3e-26 Identities = 135/178 (76%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 17 CTTTGAAAAAATTAGAGCGTTC---AAAGCAGGCCTTTGCTCGAATACATTACCATGGAA 73 |||| ||||||||| ||| |||| |||||||| || ||||| ||| || ||| Sbjct 833 CTTTAAAAAAATTAAGTAGTTATTTAAAGTAGGCCTTTACTTAAATACGTTAGTATAGAA 774 Query 74 TAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 ||||||||||||| | || ||||||| | ||||||||||| |||||| || || Sbjct 773 TAATAGAATAGGATATATAGTCCTATTTTATTAGTTTCTAGGAC--TACGTAATAATTAA 716 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 || ||||||| ||||| | |||||| |||| | | |||| |||||||| |||||||| Sbjct 715 TAGGGATAGTTAGGGGTATTAGTATTTAATTATTAGAGGTAAAATTCTTAGATTTATT 658 >seq957 Length=323 Score = 109 bits (120), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 109 TTCTAGGACCGCCCGTAATGATAAATACGGATAGTCG-GGGGTGTCAGTATTCAATTGTC 167 ||||||||||||| |||||||| |||| ||| ||||| |||| |||||||||||||||| Sbjct 323 TTCTAGGACCGCC-GTAATGATTAATAGGGACAGTCGAGGGGCATCAGTATTCAATTGTC 265 Query 168 AAAGGTGAAATTCTTGGATTTATT 191 | |||||||||||||||||||||| Sbjct 264 AGAGGTGAAATTCTTGGATTTATT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511353712000