Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4371 297 6e-78 seq44237 293 7e-77 seq39191 268 3e-69 seq6010 248 3e-63 seq6009 224 3e-56 seq52554 183 9e-44 seq37348 82.4 2e-13 >seq4371 Length=734 Score = 297 bits (328), Expect = 6e-78 Identities = 284/361 (79%), Gaps = 31/361 (9%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 489 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATGTTTAGGGGATCTGAGAGG 430 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| | ||||| ||| |||||||||||| ||| ||||||||||||||||| ||| || Sbjct 429 ATGA-CCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAG-AGTAAGG 372 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG-AGCGATGAAGGCCTT 346 ||||||| |||||||| |||||||| |||| | |||||||| || ||||||| || Sbjct 371 AATATTGGTCAATGGGCGGAAGCCTGAACCAGCCATGCCGCGTGCAGGAATGAAGGTTTT 312 Query 347 CGG-GTCGTAAAGCTCTGTCCTCAAGGAAGA-------------TAA------------T 380 ||| |||||||||||||| || |||||| ||| | Sbjct 311 CGGAATCGTAAAGCTCTGTTGCCAGGGAAGAACGTCTTGGAGAGTAACTGCTCCGAGAGT 252 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG-CAGCCGCGGTAATACGTA 439 |||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| Sbjct 251 GACGGTACCTGAGAAGAAAGCCCCGGCTAACTACGTGCCAGCCAGCCGCGGTAATACGTA 192 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||| |||||| |||||||||| | |||||||||| | ||| ||| || |||||| Sbjct 191 GGGGGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGCGCGCGCAGGCGGCCGTTTAAGT 133 Query 500 C 500 | Sbjct 132 C 132 >seq44237 Length=356 Score = 293 bits (324), Expect = 7e-77 Identities = 222/259 (86%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 239 CATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACA 298 || |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1 CACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGG-AATATTGCACA 59 Query 299 ATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAG 358 |||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| ||||| Sbjct 60 ATGGGCGAAAGCCTGATGCAGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAAC 119 Query 359 CTCTGTCCTCAAGGAAGA-----TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTA 413 |||| || || ||| || | ||||||||| || || ||||| ||||| ||||| Sbjct 120 CTCTTTCAGCAGGGACGAAGCGGAAGTGACGGTACCTGCAGAAGAAGCACCGGCCAACTA 179 Query 414 CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTA 473 |||||||||||||||||||||||| |||| || |||||| |||||||||| | ||||||| Sbjct 180 CGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTGTCCGGAATTA-TTGGGCGTA 238 Query 474 AAGGGTGCGTAGGTGGTTT 492 ||| | |||||| ||||| Sbjct 239 AAGAGCTCGTAGGCGGTTT 257 >seq39191 Length=1123 Score = 268 bits (296), Expect = 3e-69 Identities = 297/391 (76%), Gaps = 19/391 (5%) Strand=Plus/Minus Query 1 CGAGCGATTCTCTTCGGAGAAGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCC 60 ||| |||| || ||||| | | || |||| ||||||| |||||||||||| || |||||| Sbjct 379 CGAACGATGCT-TTCGG-GCATAGTGGCGCACGGGTGCGTAACGCGTGGG-AATCTGCCC 323 Query 61 TGTACACACGGATAACATACCGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCA 120 | | |||||||| |||| | |||||||| ||||| | ||| || | Sbjct 322 TTTGGTTCGGGATAACAGTTGGAAACTTGAGCTAATACCTTATAATGT-CTT----CGGA 268 Query 121 TGGTAGAAGTATCAAAGCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGG 180 ||| |||| | | || ||| ||||||| |||||| ||||||| Sbjct 267 CCAAAGATTTATCG------CCGAGG-----GATGAGCCCGCGTAGGATTAGGTAGTTGG 219 Query 181 TAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACA 240 | ||||| ||| ||||||| |||||||| |||| | |||||||| ||||| |||||| Sbjct 218 TGGGGTAATGGCCTACCAAGCCGACGATCCTTAGCTGGTCTGAGAGGATGATCAGCCACA 159 Query 241 TTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAAT 300 ||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| Sbjct 158 CTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAAT 99 Query 301 GGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCT 360 |||| ||||||||| |||||| |||||||||| |||||||||||| |||| |||||||| Sbjct 98 GGGCGCAAGCCTGATCCAGCAATGCCGCGTGAGTGATGAAGGCCTTAGGGTTGTAAAGCT 39 Query 361 CTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || | || ||| ||||||||| |||| || Sbjct 38 CTTTTACCAGGGATGATAATGACAGTACCTG 8 >seq6010 Length=1125 Score = 248 bits (274), Expect = 3e-63 Identities = 175/200 (88%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||||| ||||| ||| |||||||||||||||| ||| | | ||| Sbjct 868 GTCGGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTG 927 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 928 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 987 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 988 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 1047 Query 343 CCTTCGGGTCGTAAAGCTCT 362 | |||||||||||||| || Sbjct 1048 ACCTCGGGTCGTAAAGCACT 1067 >seq6009 Length=607 Score = 224 bits (248), Expect = 3e-56 Identities = 230/297 (77%), Gaps = 29/297 (10%) Strand=Plus/Plus Query 229 TGATCGGCCACATTGGAACTGAGACACGG-TCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 6 TGACCAGCCACACTGGAACTGAGACACGGATCCAGACTCCTACGGGAGGCAGCAGTGGGG 65 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||||||| ||||||||| ||||||||| |||| | |||||||| | || ||||||| || Sbjct 66 AATATTGGACAATGGGC-GAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGGCC-TC 123 Query 348 GGGTCGTAAAGCTCT---------------GTCCTCA-AG-GAAGA--------TAATGA 382 |||||||||||| || | |||| || ||| | | ||| Sbjct 124 GGGTCGTAAAGCACTTTAAGTTGGGAGGAAGGGCTCATAGCGAATACCTGTGAGTTTTGA 183 Query 383 CGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442 || ||| || |||| |||||||||| |||||||||||||||||||||||| |||| Sbjct 184 CGTTACCAACAGAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG 243 Query 443 GGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || ||||||| |||||||||| |||||||||| | |||||||||| || ||||| Sbjct 244 TGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGCTTGATAAGT 299 >seq52554 Length=343 Score = 183 bits (202), Expect = 9e-44 Identities = 187/239 (78%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 ||||||||||||||||||||| ||| || |||||||||| || | ||||||| ||||| Sbjct 235 AGCGGCGGACGGGTGAGTAACACGTAGGCAACCTGCCCTTTAGCCTGGGATAAC-TACCG 177 Query 83 AAA--GGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGC-- 138 || |||| |||||||| |||| | | ||||| | |||||| ||||| | |||| Sbjct 176 GAAACGGTA-GCTAATACCGGATACTTT-CTTTTCT-GCATGGGAGAAGAACGAAAGACG 120 Query 139 ------TCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGC 192 || | | | ||||| | || ||| | |||||||||||||| ||||||||| Sbjct 119 GAGCAATCTGTCACTGAAGGATGGGCCTGCGGCGCATTAGCTAGTTGGTGGGGTAACGGC 60 Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 | |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| Sbjct 59 TCACCAAGGCGACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAG 1 >seq37348 Length=1626 Score = 82.4 bits (90), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACC-AAGGCGACGATCAGTAGC-CGACC 220 ||| |||||||||||||| ||||| ||| ||| |||||||||||| ||||| | | Sbjct 89 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCTAAGGCGACGATCCGTAGCTAGGTC 30 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTG 249 ||||||| ||||| |||||| |||||||| Sbjct 29 TGAGAGGATGATCAGCCACACTGGAACTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1495648627200