Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1013 280 2e-73 seq234 237 3e-60 seq1014 120 5e-25 seq872 102 1e-19 seq685 93.3 7e-17 seq92284 80.6 4e-13 seq50805 80.6 4e-13 >seq1013 Length=628 Score = 280 bits (310), Expect = 2e-73 Identities = 233/279 (84%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 46 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAAT 103 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 163 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC-GGCCCCGAA 179 ||||||||||||| | ||||||| |||||||||||||||||| || ||||| ||| Sbjct 164 GAACGGGGTGATTTCCACCTGCAC----CAGTCGGATACGAATAGGCCTCTGGCCCAGAA 219 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||||| ||||||||| || | | || | | | || || |||| ||||| Sbjct 220 CCTTACCAGGCCGGCGTTGGTAGCTCTATTGATGTTAGAGTTACT-AGTCGGCGTATTGC 278 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||||||| | ||||||||||||||||| Sbjct 279 AATTGTACAGTGCGCAGGATTGAATCCTTTGCAGACGAC 317 >seq234 Length=1694 Score = 237 bits (262), Expect = 3e-60 Identities = 227/283 (80%), Gaps = 16/283 (6%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 604 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 547 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 546 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 487 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | ||||||||| |||| | Sbjct 486 GAACGCGGTGATAC-CGCCCGCACGT-ATAGATGGACAAGAATAGGCTCCGGCTTAGCGT 429 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGC-GGAAGCGCGGGGCGCTCAGCTGGCGGA 235 |||||||||| | |||| ||| ||||||||| | | | | | ||| | Sbjct 428 CTTAGCAGGCGATATTTCCACGG------CGCAGGAAGCGCGTCGTGGT-ATTTCGCGTA 376 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| ||||||| || | || ||| |||||||||||||||||| Sbjct 375 TTGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 333 >seq1014 Length=597 Score = 120 bits (132), Expect = 5e-25 Identities = 102/123 (83%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| |||||||||| ||||| | | |||| || ||| Sbjct 163 GTACGAGAGGAACCGTTGA-TTCT-AATAATTGGTATTTGCCGTTAGCTGAAAAGCTAGT 220 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || ||||||||||||| | ||||| |||||||||||||||||||||||||||| ||| | Sbjct 221 GCGGCGAAGCTACCATTGGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCGTGCTA 280 Query 121 GAA 123 ||| Sbjct 281 GAA 283 >seq872 Length=1357 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1207 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1150 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| || | Sbjct 1149 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1090 Query 121 GAA 123 ||| Sbjct 1089 GAA 1087 >seq685 Length=1596 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| |||||||| ||| | |||| || | || | Sbjct 1414 GTACGAGAGGAACCGTTCA-TTCACG-TAATTGGTATTTACACCTGTTCGAGAGGACAAT 1357 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| || ||||||||||||||||||||||||| |||||||| ||| | Sbjct 1356 GGTGTGAAGCTACCACGTGTTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 1297 Query 121 GAA 123 ||| Sbjct 1296 GAA 1294 >seq92284 Length=856 Score = 80.6 bits (88), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 7/133 (5%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 || ||||||| |||| || |||||| ||| || ||| |||||||||||| || | |||| Sbjct 213 GCAAAGCTACTATCTACTAGATTATAGCTAAATACCTTTAAGTCAGAATCTATACTAGAA 154 Query 124 CGGGGTGATTCTCT-CCTGCACATCGTAGTCGGATACGAATAGGCTTC-GGCCCCGAACC 181 |||||| ||| ||| ||| || |||| |||| ||||||| || ||| ||||| Sbjct 153 CGGGGTAATT-TCTACCT----ATACTAGTTAGATATAAATAGGCCTCTAGCCTAGAACC 99 Query 182 TTAGCAGGCCGGC 194 ||| |||| ||| Sbjct 98 TTACTAGGCTGGC 86 >seq50805 Length=828 Score = 80.6 bits (88), Expect = 4e-13 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| ||||| |||||| | ||| | | || ||| | | Sbjct 111 GTACGAGAGGAACTATA-ATTTTAGA-TAATTAGTTTTTACAGCTATTTAACTAGGTAAT 168 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | ||||||| |||| || |||||| ||| || |||||||||||||||| || | | Sbjct 169 ACTGTAAAGCTACTATCTACTAGATTATAGCTAAATACCTCTAAGTCAGAATCTATACTA 228 Query 121 GAACGGGGTGATT 133 ||| |||| ||| Sbjct 229 GAATAGGGTAATT 241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818165939200