Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq79363 293 8e-75 seq52210 190 7e-44 seq35473 95.1 4e-15 seq76763 93.3 1e-14 seq64133 89.7 2e-13 seq64132 89.7 2e-13 seq74443 82.4 3e-11 seq38246 82.4 3e-11 >seq79363 Length=1434 Score = 293 bits (324), Expect = 8e-75 Identities = 681/1012 (67%), Gaps = 15/1012 (1%) Strand=Plus/Plus Query 17015 ATCAAGGCGCTGGAAGAC-GCGTTGCGATCGCACGGATTAATCGACGGATGAACATCAAA 17073 || || || || ||||| || |||| | || || ||||| || |||| | || ||| Sbjct 413 ATTAAAGCCCTTGAAGATTGCAATGCGTGCTCATGGGTTAATTAACTGATGGAAATTAAA 472 Query 17074 CTGATTGATAACCCGCTACGACTGGCAGAGTTTCTCAATGACCGCCAGAACACCGGCAGG 17133 | || |||||||| | | || || || || ||||| ||| ||||| || | Sbjct 473 ATCATCGATAACCCTTTCAGGCTTGCTGATTTCCTCAACAACCCGACCAACACAGGAAAT 532 Query 17134 ATTGTTGAGCCGGGCGAGCATTACCGCATCAAAGCAGACGCGCTGTATCTGGGGATCTAC 17193 || ||||| |||| | ||| | || || | |||||||| ||||| || || || Sbjct 533 ATCGTTGATAAAGGCGGGTGTTATCTGATTAAGCCTGACGCGCTATATCTTGGCATTTAT 592 Query 17194 GAGGGCGTGACGCTGGTCGGGGTGCATGAGGTGCGCCCGTTCTGGCTGGGGGTGGTGGAA 17253 || || || || | || ||||||||||| | ||||||| | | || || Sbjct 593 GAAGGAAGGATTCTTGCTGGCGTGCATGAGGTAAGAAACTTCTGGCAAAGCATAGTTGAG 652 Query 17254 TGCCACGCCATTTACG-CGCCGGACTTTCGTGGCCGCTATGCGCTCGAGGGGCATCGCCT 17312 ||||| || ||||| | ||| || |||| | || || |||||| | || ||||| | Sbjct 653 TGCCATGCAATTTATGACGCTGG-CTTTAGGGGGAA-TACGCGCTCAAAGGACATCGAAT 710 Query 17313 GTTCTGTCGCTGGTTGCTGGAAAATTCGACCTTTAC-CAACAGTATCACCCTGGTACCGG 17371 |||||||| ||| | || ||||| || ||| || | ||||||||| ||| |||| || | Sbjct 711 TTTCTGTCGATGGCTTCTCGAAAACTC-ACCATTCCTCAACAGTATAACCATGGTCCCCG 769 Query 17372 ACACCACTCAATACGGCCGGGTGATCATTCGACTGCTGGGGGCAAGGCGCGTCGGTCATC 17431 |||| || | || ||| ||| ||||| | ||||| ||||||| | || |||||| Sbjct 770 ACACAACAAAGTATGGCAGGGCCATCATAAGGCTGCTAGGGGCAACCAGAGTGGGTCATA 829 Query 17432 TTGATGACGCCTACCTGAGTGCCGGAAAAACCGTTGGCGTCACGCTCTATCAGCTGACGC 17491 | || || ||||| || || || || |||||||||| || ||||||||||| | | Sbjct 830 TCGAAGATGCCTATATGGGTAATGGCAATCCCGTTGGCGTAACTCTCTATCAGCTACCTC 889 Query 17492 GATCGCAATATGAGGAATTAGCCAATG-TTAGTGTTGACTGAGCAGTTTAAAAACAAACT 17550 | ||||||||||| ||| ||||| | | | | | | ||| | |||| || || Sbjct 890 GCAGAAAATATGAGGAAATAGTCAATGATCATTTTCCATTTAGC-GAATAAACAC---CT 945 Query 17551 GGAGCCGATGCACGGTTTGATGAAAGGGGGCGA-CGGTGGCGCAGGCGCACAGGCGGATG 17609 | | | || || || ||||| || || || ||||||||||| || ||||| | | Sbjct 946 --AAACAAAGC-CGTTTATATGAAGGGCGGGGAGTGGTGGCGCAGGGGCTCAGGCTCAGG 1002 Query 17610 CGACCCGACAGGCCACCGCCCTGCAACGTGAGCAATGGGAAACGGTGATGAAAAACCTTG 17669 | || | ||||| ||||| || || || ||||| ||| | ||||||||||| || || | Sbjct 1003 CAACGCAGCAGGCTACCGCACTACAGCGCGAGCAGTGGCAGACGGTGATGAACAATCTCG 1062 Query 17670 AACCCTATATGCAGGCAGGGCGGCCCGCGCTTGAGCAACTGCAAGGATTATCGACGCTCG 17729 |||||||||||||| || | ||| || | |||| || || | | || || | Sbjct 1063 CACCCTATATGCAGGTCGGTCAGCCAGCATTGCAGCAGCTACAGAGCCTTTCAACATTAC 1122 Query 17730 AGGGACAAAACAAGGCGCTCGGTGATTACTACAACTCAGACCAGTACCGGCAACTGGCCG 17789 |||| || | || || | || | || || ||| ||||| ||| | || || ||| Sbjct 1123 AGGGCCAGGATAACGCCTTAAGTCAGTATTATGGCTCTGACCAATACAGACAGCTTGCCA 1182 Query 17790 ACCAGGCGCGTTATCAGTCGTTGGCGTCCGCAGAGGCGACCGGCGGACTTGGGTCAACAG 17849 | ||||| || ||||| | || || |||||||| || || || || || || | Sbjct 1183 ATCAGGCTCGATATCAAAGCCTCGCATCTGCAGAGGCAACGGGTGGGCTGGGAAGCACGG 1242 Query 17850 CCACCGGTAATCAACTGGCGTCCATCGCCCCCGCGCTCGGGCAGAACTGGCTCTCCGGTC 17909 | || ||| | ||||| | || || || || || || |||| |||||| || || | Sbjct 1243 CAACACAGAATAATCTGGCAGCGATTGCGCCTGCACTTGGACAGAGCTGGCTTTCAGGAC 1302 Query 17910 AAATGCAGAACTACGGCAACCTGCTCAATATCGGCATGAATGCCGCAGCGGGGCAAGCCT 17969 | ||||| || | | || |||| || || |||||||| || || || || || | Sbjct 1303 AGATGCAAAATCAGAGTAATTTGCTGGGGATTGGTATGAATGCAGCCGCAGGTCAGGCGT 1362 Query 17970 CCGCCGGGCAGAATTACGCCAATAATACCTCACAGCTGCTGCAACAGCAGGC 18021 | || || |||| ||||| || ||||| || || |||| |||||||| Sbjct 1363 CAGCAGGTCAGAGCTACGCTAACAATACAGGCCAACTTTTGCAGCAGCAGGC 1414 >seq52210 Length=545 Score = 190 bits (210), Expect = 7e-44 Identities = 325/472 (69%), Gaps = 16/472 (3%) Strand=Plus/Plus Query 9539 ATTGACGGTATGGACTTTGGTTGGGATCACCCTCAGGCCCATATTCAGCTGGTATGGGAT 9598 || ||||| ||||||||||| ||||||||||| ||||| ||| ||||||| || || Sbjct 2 ATCGACGGCATGGACTTTGGCTGGGATCACCCACAGGCGCATGTTCAGCTTGTTATCGAC 61 Query 9599 AACGAAAACGAGATGTTTTATGTCACCCGTGCCTATAAGGCGCGCCAAGTATCGCCCGCT 9658 || || ||||| | || | ||||| || | ||||| |||| ||| |||||| Sbjct 62 AAAGACAACGAATCCTACTACCTGACCCGCGCATGGAAGGCAAGCCAGACATCTCCCGCT 121 Query 9659 GAAGCCTATAGCGCCGTCAGCATATGGGCCGAAAATGTGCCAACGGCGTGGCCTTCGGAC 9718 ||||| | |||| |||| |||||| | || ||||| || || |||||| ||| Sbjct 122 GAAGCGT-GGGCGCTGTCAAAGCATGGGCTAACAAAGTGCCTACTGCATGGCCTCAGGAT 180 Query 9719 GGATTGATGACGGAAAAAGGCTCGGGCATTCAGCAAAAAACCTATTACGACGACGCCGGA 9778 || ||| |||||| || ||| || | ||||| || ||||| ||||||| ||| Sbjct 181 GGCTTGCAGACGGAGAAGGGCAGCGGGTTGCAGCAGAAGCAATATTATCACGACGCAGGA 240 Query 9779 TTTTGCATGTTGCGCGATCCGGCGCAGTGGCCAGAC--------------GGTAGCCGGT 9824 ||| ||| | ||||| | || |||||||| ||| | ||| ||| Sbjct 241 TTTCAGATGCTTAGCGATGCCGCTCAGTGGCCTGACAATTCACGATCAGTAGAAGCAGGT 300 Query 9825 C-GGTTGAACTGCATGACCTTATGCGCCGGGGAAAATTCAAGGTTTTCTCAGGACTCAGG 9883 | | |||| || ||||||| ||||||| || |||||||| ||| ||| | | Sbjct 301 CTGTTTGAGCTATATGACCTGATGCGCCATGGTCGGTTCAAGGTGTTCCGTGGATTGCGC 360 Query 9884 GAtttttttGATGAATACAATTTCTACCATCGTGACGAAAAATCCCGCATCGTCAAAATG 9943 || | ||||| |||| ||| ||||| || || || || ||| |||||| ||||| | Sbjct 361 GACTGGTTTGAAGAATTCAACTTCTATCACCGAGATGACAAAGGCCGCATAGTCAAGACT 420 Query 9944 CGTGACGACATTCTCGACGCGGTGCGTTATGCCTACATGATGCGGCGCTATG 9995 || |||||| |||| || || || || |||||||||||||| || |||| Sbjct 421 CGCGACGACCTTCTTGATGCCACTCGGTACGCCTACATGATGCGCCGATATG 472 >seq35473 Length=4285 Score = 95.1 bits (104), Expect = 4e-15 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 23744 TCCAGACAGCGCGTGCTGTACGGATACGG-CGACGTGGTGCCGTGGTAAAACAGCAGCGG 23802 || || ||||| || ||||| |||||||| | |||| ||||| || ||||| | ||| Sbjct 2524 TCAAGCCAGCGGGTACTGTAAGGATACGGGCTACGTT-TGCCGCTATAGAACAGAACCGG 2582 Query 23803 AATGACCACCGGTAGCTGATCGTTGCCCTGT-TCTAGATGCCGCTGCATCGCGGCGACCG 23861 ||||| | ||||||| | | ||| ||||| || |||||||||||||| || || | | Sbjct 2583 GATGACTAACGGTAGCCGTTTGTT-CCCTGCGTCAAGATGCCGCTGCATTGCCGCAATGG 2641 Query 23862 CATACCGTAGCAATCGAAACGCCATCAGCTTTTCCGGGCGGCTCTGGTGCTCTA-TCAGA 23920 |||| || | || || |||||||| |||| ||||| |||||| || | | ||| Sbjct 2642 CATAGCGCATCAGTCTGAACGCCATATGCTTATCCGGTGATGACTGGTGTTCGATTAAGA 2701 Query 23921 CAGTAGACGTAACCATC 23937 || | || ||| ||||| Sbjct 2702 CA-TGGATGTAGCCATC 2717 >seq76763 Length=785 Score = 93.3 bits (102), Expect = 1e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 6592 CCACCGCCAGCGTGGATGCTGCAACCAGCGCCGGACTTACTGACGCCACTCGGGGAAATT 6651 || || || ||||||||| || |||| || ||||||| |||||| ||| | | ||| Sbjct 675 CCTCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATT 616 Query 6652 ATTTCACTCTCAGACGACGAATCGAAACCGCCAATCGGCAGATAAACGGCTTGCAGGACT 6711 ||||||| |||||| ||||||||||||| || ||| | | |||| | ||||||| Sbjct 615 ATTTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAGCAACTGACCGGCCTACAGGACT 556 Query 6712 ATGTCCGGCAGGTGTGTTT 6730 |||| || ||||| || || Sbjct 555 ATGTGCGTCAGGTCTGCTT 537 Score = 80.6 bits (88), Expect = 9e-11 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 35991 CCGCCGCCCGCCTGGATGATGCTGCCCGCGCCAGATTTGACGACGCCGCTCGGCGCGATT 36050 || || ||||| ||||||||| || | || || || || |||||||||| ||| |||| Sbjct 675 CCTCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATT 616 Query 36051 ATTTCACTCTCCGAAGCCGAATCGACATCGCCAGCCGGCAGATAAACGGCTTGCAGGACT 36110 ||||||| ||| || |||||||| | || || ||| | | |||| | ||||||| Sbjct 615 ATTTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAGCAACTGACCGGCCTACAGGACT 556 Query 36111 ATGT 36114 |||| Sbjct 555 ATGT 552 >seq64133 Length=746 Score = 89.7 bits (98), Expect = 2e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 6592 CCACCGCCAGCGTGGATGCTGCAACCAGCGCCGGACTTACTGACGCCACTCGGGGAAATT 6651 || || || ||||||||| || |||| || ||||||| |||||| ||| | | ||| Sbjct 277 CCGCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATT 218 Query 6652 ATTTCACTCTCAGACGACGAATCGAAACCGCCAATCGGCAGATAAACGGCTTGCAGGACT 6711 ||||||| |||||| ||||||||||||| || ||| | | ||| | ||||||| Sbjct 217 ATTTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAGCAACTGACTGGCCTACAGGACT 158 Query 6712 ATGTCCGGCAGGTGTGTTT 6730 |||| || ||||| || || Sbjct 157 ATGTGCGTCAGGTCTGCTT 139 Score = 80.6 bits (88), Expect = 9e-11 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 35991 CCGCCGCCCGCCTGGATGATGCTGCCCGCGCCAGATTTGACGACGCCGCTCGGCGCGATT 36050 ||||| ||||| ||||||||| || | || || || || |||||||||| ||| |||| Sbjct 277 CCGCCACCCGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGCGGGATT 218 Query 36051 ATTTCACTCTCCGAAGCCGAATCGACATCGCCAGCCGGCAGATAAACGGCTTGCAGGACT 36110 ||||||| ||| || |||||||| | || || ||| | | ||| | ||||||| Sbjct 217 ATTTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAGCAACTGACTGGCCTACAGGACT 158 Query 36111 ATGT 36114 |||| Sbjct 157 ATGT 154 >seq64132 Length=632 Score = 89.7 bits (98), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 6591 CCCACCGCCA---GCGTGGATGCTGCAACCAGCGCCGGACTTACTGACGCCACTCGGGGA 6647 ||| |||||| ||||||||| || |||| || ||||||| |||||| ||| | | Sbjct 197 CCCTCCGCCACCGGCGTGGATGATGATGGCAGCCCCCGACTTACAGACGCCGCTCAGTGG 138 Query 6648 AATTATTTCACTCTCAGACGACGAATCGAAACCGCCAATCGGCAGATAAACGGCTTGCAG 6707 |||||||||| |||||| ||||||||||||| || ||| | | ||| | ||| Sbjct 137 GATTATTTCACCCTCAGAGAGCGAATCGAAACCGTCACAAAGCAACTGACTGGCCTACAG 78 Query 6708 GACTATGTCCGGCAGGTGTGTTT 6730 |||||||| || ||||| || || Sbjct 77 GACTATGTGCGTCAGGTCTGCTT 55 >seq74443 Length=205 Score = 82.4 bits (90), Expect = 3e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 25666 TCATCATGGGTGTACACACCGAGAATGACCTCCGGGCAATACAACCTCGCCCAGTATTTT 25725 || ||| | ||||||||||| | ||| || || ||||| || | | ||||||| ||| Sbjct 160 TCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTTG 101 Query 25726 ACCGCCAGATAGGCGAGTTGCTGCCGGGGATTGCTGGCCCACAACGGCGAATTGCGGACC 25785 || || ||||| |||||||| ||||||| |||||||||||| | || || || ||| Sbjct 100 GTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGGCCCACAATGTGGAGTTACGCACC 41 >seq38246 Length=2704 Score = 82.4 bits (90), Expect = 3e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 25666 TCATCATGGGTGTACACACCGAGAATGACCTCCGGGCAATACAACCTCGCCCAGTATTTT 25725 || ||| | ||||||||||| | ||| || || ||||| || | | ||||||| ||| Sbjct 1514 TCGTCAGGCGTGTACACACCTAAAATCACATCAGGGCAGTAAAGGCGCGCCCAGCGTTTG 1573 Query 25726 ACCGCCAGATAGGCGAGTTGCTGCCGGGGATTGCTGGCCCACAACGGCGAATTGCGGACC 25785 || || ||||| |||||||| ||||||| |||||||||||| | || || || ||| Sbjct 1574 GTTGCGAGGTAGGCCAGTTGCTGGCGGGGATCGCTGGCCCACAATGTTGAGTTACGCACC 1633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166538713226400