Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq28361 307 3e-79 seq43510 217 4e-52 seq2347 214 5e-51 seq60516 165 2e-36 seq51075 147 6e-31 >seq28361 Length=3781 Score = 307 bits (340), Expect = 3e-79 Identities = 507/726 (70%), Gaps = 14/726 (2%) Strand=Plus/Minus Query 37724 GGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTC 37783 |||||||| || | || || | |||| | || || || | || ||||| ||||| || Sbjct 2660 GGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGGATGGCTTTCCCCTG 2601 Query 37784 GTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAA 37843 || || || ||||| | ||| | |||||||||||| |||| ||||| |||||| | || Sbjct 2600 GTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGCTGTGGTTTCTGCAA 2541 Query 37844 GGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCG 37903 || || || ||| | | || || | || || || | || |||||||||||||| Sbjct 2540 GGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATCTGGGATGAGTGGGCA 2481 Query 37904 GACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCA 37963 || || | ||| |||| || ||| | |||||| || ||||| ||| || | | Sbjct 2480 GATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCGTAGCTGG--GGCACCG 2423 Query 37964 GACGGGA--AAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAACGAAATCCGC 38021 || | || || || |||||| | || | ||| ||||||| || ||||| Sbjct 2422 CCCGTGGCGAAGAGATTGATCAGATCACCAAAGTGATTGAACAGATCAAGCGCGATCCGG 2363 Query 38022 ATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGC 38081 |||| ||||| | | || || ||||| || | ||| |||| || ||| |||| Sbjct 2362 ATTCCCGCCGCATCATTGTCTCGGCGTGGAACGTGGGCGAACTGGATGAAATGGCGCTGG 2303 Query 38082 CGCCGTGTCATTACGCCTTT---CAGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGT 38138 | ||||| ||| |||||| |||||||| ||||| | ||| || | || || | Sbjct 2302 CTCCGTGCCAT---GCCTTTTTCCAGTTCTACGTCGCGGATGGCAGGCTCTCCTGTCAGC 2246 Query 38139 GGCAGCAGCGCTCCGTTGATACGTTTT--TAGGGTTGCCGTTTAACATCGCGAGCTACGC 38196 | ||||| ||| || || |||| | ||| |||||||||||||||| ||||| || Sbjct 2245 TTTACCAGCGTTCC--TGCGACATTTTCCTGGGGCTGCCGTTTAACATCGCCAGCTATGC 2188 Query 38197 GCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCAC 38256 |||| || ||||||||| || ||||| ||||| |||| |||||||| | | | || Sbjct 2187 GCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGACTTTGTCTGGAC 2128 Query 38257 CGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCG 38316 ||||||||| || | |||| || || ||||| || ||| ||||| |||||||| Sbjct 2127 CGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCAACTGACGCG 2068 Query 38317 CGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGACTA 38376 ||| ||||| || | |||||||| ||| | ||||| ||||| | || | |||||||| Sbjct 2067 CGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTCGCTGTTTGACTA 2008 Query 38377 TGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGT 38436 | | |||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct 2007 TCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCATCAAAGCGCCGGT 1948 Query 38437 GGCGGT 38442 ||||| Sbjct 1947 TGCGGT 1942 >seq43510 Length=3912 Score = 217 bits (240), Expect = 4e-52 Identities = 528/793 (67%), Gaps = 5/793 (1%) Strand=Plus/Minus Query 37653 TGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGACC 37712 |||| || || | ||| ||||||| || | | || | |||| || ||| |||| Sbjct 1216 TGAAGCAGTACCTGGACCTGCTGCAGCACGTGCTGGAGCATGGCGCGGAGAAATCCGACC 1157 Query 37713 GAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATG 37772 | || ||| |||||||| ||||||||| | ||| | || ||| || | | || | Sbjct 1156 GCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAACGACG 1097 Query 37773 GATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTT 37832 | || || || || || || || || |||| | ||||| ||| | | || |||| | Sbjct 1096 GCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGT 1037 Query 37833 GGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGG 37892 |||| | || ||||| || ||| || |||| | |||| || || | || |||| Sbjct 1036 GGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGGG 977 Query 37893 ATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGT 37952 | |||||||| || | | ||||| ||||||||| | |||||| ||| ||||| | Sbjct 976 ACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGCT 917 Query 37953 GGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCA-TGGGTTGTCGAAGAGATCAAA 38011 ||| || || ||||| ||||||||||| ||| ||| | || || |||||||| Sbjct 916 GGACCGGCGCCGACGGCCGCGAGATCGACCAGAT-GCAGTGGCTGGTGGACGAGATCAAG 858 Query 38012 CGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAG 38071 || |||||| |||| || |||||| || | ||||| ||||| || || ||| || || Sbjct 857 CGCAATCCGGATTCGCGGCGGCTGGTGATCAGCGCCTGGAACGTGGCCGAACTGCCGCAG 798 Query 38072 ATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCA 38131 ||| |||| |||||| || | || |||||||| || | | ||||| | | Sbjct 797 ATGGCGCTGATGCCGTGCCACAGCCTGTTCCAGTTCTACGTGGTCGACGGCAAGCTCAGC 738 Query 38132 TGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGC 38191 ||| | | | |||||| || || | || | || ||||||| |||||||| ||| Sbjct 737 TGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCCAGC 678 Query 38192 TACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATT 38251 ||||||||| |||| || ||||| || || || | ||| || || || || | Sbjct 677 TACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCGTGGGCGATTTCGTG 618 Query 38252 TTCACCGGCGGCGACGTCCATTTGT-ACAAAAATCATCTGGAACAAGCGAAACTGCAGCT 38310 ||| ||||| | || ||| || || || | ||||| ||| || || Sbjct 617 CACACGCTGGGCGATGCGCACCTGTAACTCCAACCACTTCGAACAGGCGCGCGAACAACT 558 Query 38311 GACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAA-ACGGAAGCCGCCGTCTATCT 38369 | ||||| |||||| ||| ||||| | | |||||| ||| | | ||| | | | Sbjct 557 GGCGCGCACGCCGCGGCCGTTGCCGCGGTTGCGGCTGAATCCGGCGGTCACCGAC-CTGT 499 Query 38370 TTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAG 38429 | | || ||||||||| | | |||| ||||| || |||||||||||||| || | Sbjct 498 TCGCCTTCACCTACGACGACATCGCCATCGAGGGCTATGACCCGCATCCGGCGATCAAGG 439 Query 38430 CACCGGTGGCGGT 38442 | |||||||| || Sbjct 438 CGCCGGTGGCCGT 426 >seq2347 Length=4848 Score = 214 bits (236), Expect = 5e-51 Identities = 410/602 (68%), Gaps = 2/602 (0%) Strand=Plus/Minus Query 37736 GTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAA 37795 || |||||| |||| | | ||| || | || || ||||| || || || || || Sbjct 2039 GTCTTCGGCTACCAGATGAGATTCGACCTGGCCGAGGGCTTTCCCCTGGTCACCACCAAG 1980 Query 37796 AAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAAC 37855 |||| ||| | | |||||||| | |||||||| ||||| | | ||||| || || Sbjct 1979 AAATGCCATCTGAGATCCATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGAGACCAAT 1920 Query 37856 GTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGC 37915 ||||||| || |||| ||||||||| | || ||||| || ||||| ||||| ||||| Sbjct 1919 ATCCGCTACCTGAAGGACAATGGCGTGTCCATCTGGGACGAATGGGCCGACGAGAACGGT 1860 Query 37916 GATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACC 37975 || || || ||| | |||||| || |||||| ||| || | | || || Sbjct 1859 GAGCTGGGACCGGTCTACGGCTACCAGTGGCGCAGCTGGCCGGCACCCGATGGTCGCCAT 1800 Query 37976 ATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTG 38035 |||||||||||||| |||| || || |||| || || | || || || ||| Sbjct 1799 ATCGACCAGATCGCCGGGGTGGTGGACATGATCCGCGCCAAGCCCGACTCGCGGCGCCTG 1740 Query 38036 CTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTAC 38095 | || || |||||| || ||||||||||| |||||||||||| ||| | Sbjct 1739 ATCGTCTCGGCCTGGAATCCGGCCCTGGTGGACGAGATGGCGCTGCCGCCGTGCCATG-C 1681 Query 38096 GCCTTTC-AGTTCTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGT 38154 || ||| |||||||||||||| | || || || ||| | | | |||||||||| Sbjct 1680 GCTGTTCCAGTTCTATGTCGCCGATGGTCGCCTGAGCTGCCAGCTGTATCAGCGCTCCGC 1621 Query 38155 TGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGT 38214 || | || | || |||| || |||||||| ||||| |||||| |||| | ||||| Sbjct 1620 CGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAGCTATGCGCTGCTGACCCTGATGGT 1561 Query 38215 AGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTT 38274 ||||| || || | || ||| |||| | |||||||| || |||| | Sbjct 1560 GGCCCAGGTCACCGGGCTGCAGCCGGGCGAATTCATCTGGACCGGCGGTGATTGCCATCT 1501 Query 38275 GTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCC 38334 || ||||| ||||| || | | ||||||||||| |||||||||| |||||||| Sbjct 1500 CTATGCCAATCACCTGGAGCAGACCGATCTGCAGCTGACCCGCGAGCCGCTGCCGCTGCC 1441 Query 38335 GA 38336 || Sbjct 1440 GA 1439 >seq60516 Length=573 Score = 165 bits (182), Expect = 2e-36 Identities = 339/495 (68%), Gaps = 7/495 (1%) Strand=Plus/Plus Query 37703 AAAGAAGACCGAACGGGCGTCGGCACGCTGTCG-GTGTTCGGCCGCCAGCTCCGCTTCAA 37761 || |||||||| || ||| |||||| || | |||||||| |||| | |||||||| Sbjct 83 AAGGAAGACCGTACCGGCACCGGCAC-CTACAGCGTGTTCGGTTACCAGATGCGCTTCAA 141 Query 37762 CTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTA 37821 | | ||||| || || |||| || || || || | || | |||||||| | Sbjct 142 CCTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCA 201 Query 37822 TGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGT 37881 |||||| || ||||| | | || ||||| || || || || |||| || ||||| Sbjct 202 TGAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGT 261 Query 37882 GACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCA 37941 | || ||||| |||||||| ||||| |||||| | ||||||||| | |||||| || Sbjct 262 CAGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCA 321 Query 37942 ATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC-GCATGGGTTGTCG 38000 |||||| ||| || | |||| | | |||||||||||| ||| | | ||| Sbjct 322 GTGGCGCAGCTGGCCGGCGCCGAACGGCGAGTCGATCGACCAGATCAGCA-AGCTGATCG 380 Query 38001 AAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAG 38060 | |||||| | || ||| | || ||||||||| | || || |||||| || Sbjct 381 AGATGATCAAGAG-AACCCGGACTCGCGCCGGCTGATCGTCTCGGCCTGGAATCCGGCGC 439 Query 38061 AATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGC-CTTTCAGTTCTATGTCGCCAAC 38119 ||||||||||| ||||||||||| || | ||| || ||||||||||||||| || Sbjct 440 TGGTGGACGAGATGGCCCTGCCGCCGTGCCA-TGCGCTGTTCCAGTTCTATGTCGCCGAC 498 Query 38120 GGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTT 38179 ||| | | ||| | | | |||||| || || | || | || ||||||| Sbjct 499 GGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTC 558 Query 38180 AACATCGCGAGCTAC 38194 |||||||| |||||| Sbjct 559 AACATCGCCAGCTAC 573 >seq51075 Length=376 Score = 147 bits (162), Expect = 6e-31 Identities = 248/355 (70%), Gaps = 3/355 (1%) Strand=Plus/Plus Query 37706 GAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTA 37765 || || || || ||||||||||||||| || |||||| ||| | |||||| || | Sbjct 21 GACGATCGCACCGGCGTCGGCACGCTGAGCGTCTTCGGCGCGCAGATGCGCTTCGACCTC 80 Query 37766 CAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAA 37825 || || ||||| || | || || || || |||| | ||||| ||| | | || Sbjct 81 GCCGAAGGCTTTCCCGTCCTCACGACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAG 140 Query 37826 CTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGA-C 37884 |||| ||||| | || ||||| || ||| || |||| | |||| || || | | Sbjct 141 TTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGC 200 Query 37885 GATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATG 37944 || ||||| |||||||| || | | ||||| ||||||||| | |||||| ||| || Sbjct 201 CATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTG 260 Query 37945 GCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCA-TGGGTTGTCGAAG 38003 ||| |||| || || ||||| ||||||||||| ||| ||| | || || | Sbjct 261 GCGGCGCTGGACCGGCGCCGACGGCCGCGAGATCGACCAGAT-GCAGTGGCTGGTGGACG 319 Query 38004 AGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGC 38058 ||||||| || |||||| |||| || |||||| || | ||||| ||||| || || Sbjct 320 AGATCAAGCGCAATCCGGATTCGCGGCGGCTGGTGATCAGCGCCTGGAACGTGGC 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130437859095000