Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq28361 181 2e-40 seq60516 178 2e-39 seq2347 168 1e-36 seq43510 152 8e-32 seq51075 122 1e-22 seq34332 86.0 1e-11 >seq28361 Length=3781 Score = 181 bits (200), Expect = 2e-40 Identities = 190/247 (77%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 196118 AAAGCTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCAC-AGATGCGCTTCGA 196176 ||| ||||||||||||| |||||||| | | | || | | ||| ||||||| || | Sbjct 2681 AAATCTGACCGTACCGGTACAGGCACG-CTTTCAATTTTTGGTCACCAGATGCGTTTTAA 2623 Query 196177 TCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCA 196236 |||||| || || || || |||||||| || || || |||| | || ||||||||||| Sbjct 2622 TCTGCAGGATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCA 2563 Query 196237 TGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGT 196296 ||| ||||||||||| || | |||||||||||||| |||||||| || ||| ||| Sbjct 2562 TGAGCTGCTGTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGT 2503 Query 196297 CTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCA 196356 |||||||||| | |||||||| | || | || || ||||| ||||| ||||| || || Sbjct 2502 CTCTATCTGGGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACA 2443 Query 196357 GTGGCGT 196363 ||||||| Sbjct 2442 GTGGCGT 2436 Score = 105 bits (116), Expect = 1e-17 Identities = 212/312 (68%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCGTAG-TGCGGATATGTTCCTCGGTGTACCGTTCAACATCGC 196839 || |||||||| || |||||| |||| | || ||||| || | ||||| |||||||| Sbjct 2255 TCCTGTCAGCTTTACCAGCGTTCCTGCG-ACATTTTCCTGGGGCTGCCGTTTAACATCGC 2197 Query 196840 GTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTT 196899 || || ||||| | || ||||| ||||||||| | ||| || || || Sbjct 2196 CAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGACTT 2137 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 || ||||| ||||| || ||| | ||| ||| ||| |||| |||| || Sbjct 2136 TGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCTGCA 2077 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTAT 197019 ||| | || ||||| ||||| |||| |||||| || |||||||| || | | | Sbjct 2076 ACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTCGCT 2017 Query 197020 CTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAA 197079 || || || ||||| || || || | | ||| |||||||||||||| || || || Sbjct 2016 GTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCATCAA 1957 Query 197080 AGCCCCGGTGGC 197091 ||| ||||| || Sbjct 1956 AGCGCCGGTTGC 1945 >seq60516 Length=573 Score = 178 bits (196), Expect = 2e-39 Identities = 185/240 (77%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCAC-TACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 |||||||||||||| ||||| ||| | | | |||| |||||||||||| | ||| Sbjct 89 GACCGTACCGGCACCGGCACCTACAGCGTGT-TCGGTTACCAGATGCGCTTCAACCTGGC 147 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || ||||| | |||||||| ||||| ||| ||| |||||||| |||||||| Sbjct 148 CGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCATGAACT 207 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||||||||||| | || || ||||| |||||||||||||| |||||||| ||| || Sbjct 208 ACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTCAGCAT 267 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||||||||| |||| ||| ||||| || ||||| ||||| | |||||||| Sbjct 268 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAGTGGCG 327 >seq2347 Length=4848 Score = 168 bits (186), Expect = 1e-36 Identities = 183/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCAC-TACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| |||||||| || || ||| | | | ||||| |||||| | ||||| ||| Sbjct 2066 GACCGCACCGGCACCGGGACCTACAGCGTCT-TCGGCTACCAGATGAGATTCGACCTGGC 2008 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || || || ||||||||||| |||||| ||||||| | |||||||| || ||||| Sbjct 2007 CGAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACGAACT 1948 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| | || || ||||| ||| |||||||| ||||| || || || || Sbjct 1947 GCTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGTCCAT 1888 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| ||||| |||| |||| | ||||| ||||| ||||| | |||||||| Sbjct 1887 CTGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGTGGCG 1828 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || |||||||||||||| || || || |||||||| || || ||||||||||| Sbjct 1643 TGCCAGCTGTATCAGCGCTCCGCCGACATCTTCCTCGGCGTGCCCTTCAACATCGCCAGC 1584 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAAC---ATGGTACCGGGCGAGTTC 196900 || || |||||| | |||||||| ||||| | | || |||||||| ||| Sbjct 1583 TATGCGCTGCTGACCCTGATGGTGGC---CCAGGTCACCGGGCTGCAGCCGGGCGAATTC 1527 Query 196901 GTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAG 196948 | ||||| |||||||| ||| |||| |||||||| |||| ||| Sbjct 1526 ATCTGGACCGGCGGTGATTGCCATCTCTATGCCAATCACCTGGAGCAG 1479 >seq43510 Length=3912 Score = 152 bits (168), Expect = 8e-32 Identities = 212/292 (73%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 196073 CAGTATCACGAACTCTTACAGCAGGTGCTC-AGTATCGGCCACGACAAAGCTGACCGTAC 196131 ||||| | || || | ||||| ||||| || || ||| || ||| | ||||| || Sbjct 1211 CAGTACCTGGACCTGCTGCAGCACGTGCTGGAGCAT-GGCGCGGAGAAATCCGACCGCAC 1153 Query 196132 CGGCACAGGCACTA-CGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAAGACGGAT 196190 |||||| ||||| | | | | ||||| |||||||| ||||| || | ||||| | Sbjct 1152 CGGCACCGGCACGCGCAGCGTGT-TCGGCTGGCAGATGCGTTTCGACCTCAACGACGGCT 1094 Query 196191 TCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGT 196250 |||| ||||||||||| ||||| || || ||||| || ||| | || || ||||||||| Sbjct 1093 TCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGT 1034 Query 196251 TCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACG 196310 |||| || || || ||||||||| || || || |||||| ||| |||||| ||| Sbjct 1033 TCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGGGACG 974 Query 196311 AGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 ||||||| | | | || | || || ||||| ||||| ||||||||||| Sbjct 973 AGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCG 922 >seq51075 Length=376 Score = 122 bits (134), Expect = 1e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 196155 TCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAAC 196214 ||||||| |||||||||||||| || || || || || | |||| || ||||| | Sbjct 55 TCGGCGCGCAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCGTCCTCACGACCAAGAAGC 114 Query 196215 TCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCA 196274 | || ||||| || ||| | || || ||||||||||||| || || || ||||||||| Sbjct 115 TGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCG 174 Query 196275 AGTACCTGAATGACAACGGTGTC-TCTATCTGGAACGAGTGGGCGAACGAACTCGGTAAC 196333 || || || |||||| ||| | |||||| |||||||||| | | | || | Sbjct 175 CCTATCTCAAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAA 234 Query 196334 CTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 || || ||||| ||||| ||||||||||| Sbjct 235 CTCGGCCCGGTGTACGGCAAGCAGTGGCG 263 >seq34332 Length=487 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 354 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 295 Query 4266 CAGGGTCGCCACATT 4280 ||| | |||| ||| Sbjct 294 CAGAGGAGCCAGATT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770285750316000