Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq38026 138 3e-28 seq36111 123 7e-24 >seq38026 Length=5128 Score = 138 bits (152), Expect = 3e-28 Identities = 257/377 (68%), Gaps = 3/377 (1%) Strand=Plus/Plus Query 3550 GCAATCGACCGCTGGAATGCCGGTGTGCAGGCATCGCAGACCTCTGAGAACACTATCACC 3609 ||||| || |||||||| | ||| | |||| || ||| || |||| || | Sbjct 2929 GCAATGGAGCGCTGGAACGGCGGCATCAAGGCCGCGAAGAGTGATGGCAACAGCATTTCT 2988 Query 3610 ATCCTTGACGTTATCGGTGAAGATTACTGGTCTGGAGGTGGCGTTACGTCGAAACGGGTT 3669 | | ||||| ||||||| || ||||| |||| ||||||||| | | || || Sbjct 2989 GTATTCGACGTGATCGGTGCTGA---CTGGTACGGAGATGGCGTTACAGCCAGCCGCATT 3045 Query 3670 GCAGCGGCGCTTCGGGCTATCGGCAACAATGAAATCTTTGTCGATATCAACTCTCCGGGC 3729 || || ||||| || | || ||| ||| | ||| |||||||||| || ||| Sbjct 3046 GCTGCCGCGCTCCGCTCAATTGGCGGTGCTGATGTGACTGTGAATATCAACTCGCCCGGC 3105 Query 3730 GGGGACTTCTTTGAAGGTGTGGCGATCTACAATCTGCTGCGCGCGCACCCGGCGAAAGTC 3789 || ||| | |||||||| ||||||| ||||| || ||||||| | || | ||| || Sbjct 3106 GGAGACATGTTTGAAGGCCTGGCGATTTACAACCTTCTGCGCGAGTACGAAGGGAAGGTG 3165 Query 3790 ACAGTGCGCATTCTCGGCATGGCCGCTTCTGCCGCATCTGTTATCGCTATGGCCGGTGAT 3849 || || |||| || |||| || ||||| || || ||||||| ||||| || ||| Sbjct 3166 ACGGTAAAAGTTCTGGGTCTGGCAGCATCTGCAGCTTCCATTATCGCAATGGCGGGCGAT 3225 Query 3850 GAAGTCCTGATCGGCAAGGCAGGCTTCATTATGGTGCACAACGCTTGGGTTGTCGCGATG 3909 || || | ||| ||| || | ||| | ||| | |||||| |||||| |||||| Sbjct 3226 GAGGTGCAGATTGGCCGGGGTGCTTTCCTGATGATCCACAACTGCTGGGTTTATGCGATG 3285 Query 3910 GGCAACCGCCACGATCT 3926 |||||||| || || || Sbjct 3286 GGCAACCGGCATGACCT 3302 >seq36111 Length=5564 Score = 123 bits (136), Expect = 7e-24 Identities = 264/386 (68%), Gaps = 10/386 (3%) Strand=Plus/Minus Query 3544 GCAGATGCAATCGACCGCTGGAATGCCGGTGTGC-AG--GCATCGCAGACCTCTGAGAAC 3600 |||| || || || |||||| ||| || | | || ||| | ||||| || || Sbjct 3913 GCAGCAGCTATTGATCGCTGGGATGGGAGTATCCGAGCTGCAGCTCAGACTGGCGAAAAT 3854 Query 3601 ACTATCACCATCCTTGACGTTATCGGTGAAGATTACTGGTCTGGAGGTGGCGTTACGTCG 3660 || || || || |||| ||||| ||||| || ||||| || | ||| || | | Sbjct 3853 ACGATAACAATTTTTGATGTTATTGGTGAGGAC--CTGGTGGGGGGATGGGGTAAGCGCA 3796 Query 3661 AAACGGGTTGCAGCGGCGCTTCGGGCTATCGGCAACAATGAAATCTTTGTCGATATCAAC 3720 || || | || | |||| | || || || || | |||| || |||| | || ||| Sbjct 3795 AATCGTATCGCCGGGGCG-TACGTGCAATTGGAGGCGATGACGTCACTGTCCACATTAAC 3737 Query 3721 TCTCCGGGCGGGGACTTCTTTGAAGGTGTGGCGATCTACAATCTGCTGCGCGCGCACCCG 3780 || || || || ||| | ||||||||| ||||||||||||| | || |||| ||| | Sbjct 3736 TCGCCCGGTGGCGACATGTTTGAAGGTCTGGCGATCTACAACATTCTTCGCGAATACCAG 3677 Query 3781 GCGAAAGTCACAGTGCGCATTCTCGGCATGGCCGCTTCTGCCGCATCTGTTATCGCTATG 3840 | ||||| || || |||||||| | || || || |||||||| |||| || ||| Sbjct 3676 GGAAAAGTGACGGTTAAAGTTCTCGGCCTTGCAGCATCAGCCGCATCAATTATTGCCATG 3617 Query 3841 GCCGGTGATGAAGTCCTGAT-CGGCAAGGCAGGCTTCATT-ATGGTGCACAACGCTTGGG 3898 || |||||||| || | ||| ||| ||| |||| || ||| | |||||||| ||| Sbjct 3616 GCGGGTGATGAGGTGCAGATAGGGCGAGG--TGCTTTTTTGATGATCCACAACGCGTGGA 3559 Query 3899 TTGTCGCGATGGGCAACCGCCACGAT 3924 |||| || ||||||||| | ||| Sbjct 3558 TTGTGGCCGCTGGCAACCGCAATGAT 3533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149652881375400