Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq50444 138 2e-27 seq41062 105 9e-18 >seq50444 Length=3642 Score = 138 bits (152), Expect = 2e-27 Identities = 393/598 (66%), Gaps = 16/598 (3%) Strand=Plus/Minus Query 162253 CATTATGGAGACCTTACCGATGCTTTGAGTAT----CGTATCTATTATTAAAACAGTTCA 162308 ||||| || || | |||||| ||| || | | |||||| || | || || || Sbjct 1173 CATTACGGTGATTTGACCGATACTTCGAATTTGACACGTATCCTTTCTGAA----GTACA 1118 Query 162309 ACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCC 162368 ||| || || | |||||| |||| || || |||||| ||| || || ||| Sbjct 1117 ACCTGACGAGGTCTATAACTTAGGCGCGCAATCTCACGTAGCGGTAAGTTTCGAATCGCC 1058 Query 162369 TGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCT 162428 |||||||||||| | || || | || ||||| | || ||||||| || | | Sbjct 1057 AGAATACACAGCAGATGTTGATGCCATCGGTACTCTGCGTCTGTTAGAAGCGATCAGATT 998 Query 162429 TCTTGG--TATGGAATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGG 162486 ||| || || || | || ||| | | || ||||| ||| ||| |||||||| Sbjct 997 TCTGGGTTTAACTAAAAAAAC-TAA-ATTTTATCAAGCATCAACCTCTGAACTTTATGGT 940 Query 162487 CTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGA 162546 || || || |||| |||||| |||||||| || ||| | || ||||| |||||||| Sbjct 939 CTGGTGCAAGAGATACCCCAAAAAGAAACGACACCATTCTACCCACGCAGCCCTTATGCT 880 Query 162547 GTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACAT 162606 || |||||| | |||| | |||||| | | ||||| | ||| || | || || Sbjct 879 GTGGCTAAAATGTATGCATACTGGATTACCGTCAACTATCGCGAATCTTACGGAATGTAT 820 Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| ||| | || ||||||||| ||||| | || || || ||||| ||| Sbjct 819 GCCTGTAACGGGATTTTGTTTAATCACGAATCTCCACGCCGTGGCGAAACTTTCGTAACA 760 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGT--GATCTACAAC 162724 || || ||| || | || | ||| | ||||| ||| | | |||| | Sbjct 759 CGTAAAATCACACGTGGTATGGCGAATATTGCTCAAGGACTTGAAACTACGCTCTATA-- 702 Query 162725 TTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGT 162784 | || ||| | |||| | || || ||||| || || ||||| || ||| | || Sbjct 701 TGGGCAACATGGATGCACTCCGCGATTGGGGCCATGCAAAAGATTATGTAAAAATGCAGT 642 Query 162785 GGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAGCAGTA 162842 || ||||||| ||||| || | ||| || || | ||| || ||||| || | ||||| Sbjct 641 GGATGATGCTGCAGCAGGAAACGCCTGAGGACTTTGTTATTGCAACGGGCGTTCAGTA 584 >seq41062 Length=2478 Score = 105 bits (116), Expect = 9e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 153205 AGAAGCATATCTTTACATCTAATCTAAAATATCAAATCCTCCTTGATTCTGTTCAGGGTC 153264 |||||||||| || || |||||| | ||| |||||| || |||||||| ||||| |||| Sbjct 453 AGAAGCATATTTTCACTTCTAATTTGAAACGTCAAATTCTTCTTGATTCAGTTCAAGGTC 512 Query 153265 GTGGTCCTAGTATGGCTTTTGCTCCATATTG-TTCCCTACCTGAACTAGAAGGTTGTATG 153323 |||| || | | || | ||| |||| ||| |||||||| | ||| || || Sbjct 513 GTGGACCAAACCTAGCACTATTACCA-ATTGCTTCATTACCTGAAATTGAATCTTTCATT 571 Query 153324 AAAGCGTGGGAGTTTATGGAGATGATCCATTCACGTTCCTACACATATATTATTAAGAAC 153383 || | |||| ||| | || | | ||| |||||||| ||| |||||||| ||| Sbjct 572 GAAACTTGGGCATTTTTTGAAAGCGTTCATAGCCGTTCCTATACACATATTATTCGTAAC 631 Query 153384 ATCTATTCAGATCCTTCTGAAGTATTTGATACTAT 153418 | ||| | |||| || ||||||||||||||||| Sbjct 632 GTGTATCCGAATCCATCGGAAGTATTTGATACTAT 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690332985828000