Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq67 280 2e-73 seq79 194 3e-47 seq21 194 3e-47 seq50 73.4 6e-11 >seq67 Length=14727 Score = 280 bits (310), Expect = 2e-73 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 6559 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 6502 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 6501 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 6442 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||||||||| || |||||||| | ||||||||||||||||||| Sbjct 6441 ACCCAGACCTTTCGGCCAAGGAAATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 6382 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6381 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 6333 >seq79 Length=2739959 Score = 194 bits (214), Expect = 3e-47 Identities = 181/226 (80%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 ||| ||||||||||||| | ||| | || |||||| | ||||||||| ||| |||| Sbjct 1997786 CAACGGGCAGGGACGTAATTAACACATTCT-GATGACATACACTTACTAGGTATT-CCTC 1997843 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122 |||||| | ||| |||||||||| | |||| ||||||||| || ||||| ||||||||| Sbjct 1997844 GTTGAAAAGCAATAATTGCAATGCTTTATCACCATCACGACCAATTTTCACAAGATTACC 1997903 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 | | | || | ||||||||| ||| | || | |||||||||| ||||||||||| Sbjct 1997904 CAATCTTTTCAGATAAGGTGATATACTTGCTGGCTTGGTCAGTGTAGCACGCGTGCGGCC 1997963 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||| | ||||| |||| ||||||| Sbjct 1997964 CAGAACATCTAAGGGCATCACAGACATTTTATTTCCTCCAACTTCC 1998009 >seq21 Length=1284999 Score = 194 bits (214), Expect = 3e-47 Identities = 163/196 (83%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| ||||||||||| ||| | Sbjct 1277378 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATACGCTTACTAGGTATT-C 1277321 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||| | ||| |||||||||| | |||||||||||||| || ||||| |||||| Sbjct 1277320 CTCGTTGAAAAGCAATAATTGCAATGCTTTATCCCCATCACGACCAAGTTTCACAAGATT 1277261 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | || | ||||||||| ||||| || | ||||||||||||||||||| Sbjct 1277260 ACCCAATCTTTTCAGATAAGGTGATATACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCG 1277201 Query 180 GCCCAGAACATCTAAG 195 |||||||||||||||| Sbjct 1277200 GCCCAGAACATCTAAG 1277185 >seq50 Length=3764872 Score = 73.4 bits (80), Expect = 6e-11 Identities = 47/50 (94%), Gaps = 1/50 (2%) Strand=Plus/Minus Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct 2493590 GGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 2493542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999366205