Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq67 841 0.0 seq21 307 4e-81 seq28 262 2e-67 seq79 152 2e-34 seq64 120 1e-24 >seq67 Length=14727 Score = 841 bits (932), Expect = 0.0 Identities = 588/658 (89%), Gaps = 12/658 (2%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7443 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 7502 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7503 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 7562 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| Sbjct 7563 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTAAAAGGGAAGGGATTGCAAC 7622 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGG 266 ||||||||| ||| | || || |||| | | ||||| |||| | ||| | |||| Sbjct 7623 CAGACTTGCTCGC-GGTGTTCCGCCGGTCTTCTGACCGGTCTACTC-GCCGCGTTGCAGG 7680 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 |||||||||| | | || | |||| ||| | ||||||| || |||| ||| ||| Sbjct 7681 CCAGCATCAGTTGGTGCCGCTGGAT-AAGACTTGAGGAATGTAGCTCCCT--CGGGAGTG 7737 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGACTGAGGTCCGCGCTCCGGCTAGGATG 385 |||||||| ||| |||| || || | || | |||||||||||| ||||||||||| Sbjct 7738 TTATAGCCTCTTGTG--ATGCAGCGAGCGCCGGGC-GAGGTCCGCGCTTCGGCTAGGATG 7794 Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 ||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||| Sbjct 7795 CTGGCGTAATGGTCGTAATCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTAT 7854 Query 446 GCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGT 505 ||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||| Sbjct 7855 GCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGAGAACC--G 7912 Query 506 GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 565 | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7913 CAAGGTGCATCACCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTG 7972 Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7973 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 8032 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 8033 GGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 8090 >seq21 Length=1284999 Score = 307 bits (340), Expect = 4e-81 Identities = 254/308 (82%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| ||| ||||| | | ||| | ||||||||| |||||||||||||||||||||| Sbjct 1278805 AGGATGTTGGTGTAATAGCTTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 1278864 Query 440 ATCTATGCGAGTGTTTGGGTGTC--AAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 || ||| ||| ||||||||| |||||| | ||||||||||||| || | | ||| Sbjct 1278865 ATGCTTGCAAGTATTTGGGTGTTTGAAACCCTTATGCGTAATGAAAGTAAATGTAAATGG 1278924 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAG 555 || | | ||||||||| |||| ||| ||| || ||||| |||||||| Sbjct 1278925 GATCTGTCAAAAGTGCACCATTGACCAGTCCAGATTATTTATATGATGGTACTGAGTAAG 1278984 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278985 AGCAAGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 1279044 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1279045 AAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTAT 1279104 Query 676 AGGGGCGA 683 |||||||| Sbjct 1279105 AGGGGCGA 1279112 Score = 192 bits (212), Expect = 2e-46 Identities = 149/176 (85%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 1278429 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 1278488 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||||||| ||||||| |||| ||||||||||||| ||||||||| Sbjct 1278489 ATAGGTGAGAGACCGATAGCAAACAAGTACTGTGAGGGAAAGATGAAAAGAACTTTGGAA 1278548 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTG 215 |||||||| || || ||||||||||||| |||||||| | ||| | ||||||| Sbjct 1278549 AGAGAGTT-AACAGTACGTGAAATTGTTAAAAGGGAAACAATTGAAGTTAGACTTG 1278603 >seq28 Length=870612 Score = 262 bits (290), Expect = 2e-67 Identities = 244/308 (79%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| ||| ||||| | | ||| | ||| | || |||||| ||||||||||||||| Sbjct 254412 AGGATGTTGGTGTAATAGCTTTAACTGACCCATTGTGAAACACGTACCAAGGAGTCTAAC 254471 Query 440 ATCTATGCGAGTGTTTGGGTGTC--AAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 || || ||| ||||||||| |||||| | | ||||||||||| || | | ||| Sbjct 254472 ATGCTTGAAAGTATTTGGGTGTTTGAAACCCTTATGTGTAATGAAAGTAAATGTAAATGG 254531 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCG--GATGGATTTGAGTAAG 555 || | | ||||||||| |||| ||| ||| || |||| |||||||| Sbjct 254532 GATCTGTCAAAAGTGCACCATTGACCAGTCCAGATTATTTATATGATGTTACTGAGTAAG 254591 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 254592 AGCAAGTATGTTGGGACCCGGAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 254651 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||| ||||| |||||||||| | |||||||| |||||||||||||||||| Sbjct 254652 AAACTCTGGTGGAAGCTCGTAGCGGTTCTGACATGCAAATCAATCGTCAAATTTGGGTAT 254711 Query 676 AGGGGCGA 683 |||||||| Sbjct 254712 AGGGGCGA 254719 >seq79 Length=2739959 Score = 152 bits (168), Expect = 2e-34 Identities = 170/225 (76%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 |||||| ||| ||||| | | ||| | ||| ||||| |||||||||||||||||||||| Sbjct 1995889 AGGATGTTGGTGTAATAGCTTTAAATGACCCATCTTGAAACACGGACCAAGGAGTCTAAC 1995830 Query 440 ATCTATGCGAGTGTTTGGGTG--TCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 || |||| ||| |||||||| | ||| | | ||||||||||||| || | | ||| Sbjct 1995829 ATGCATGCAAGTATTTGGGTGTTTGAAATGCTTATGCGTAATGAAAGTAAATGTAAATGG 1995770 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCT--TCGGATGGATTTGAGTAAG 555 || | | ||||||||| |||| ||| ||| || | ||||| |||||||| Sbjct 1995769 GATCTGTCAAAAGTGCACCATTGACCAGTCCAGATTACTTATATGATGGTACTGAGTAAG 1995710 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 |||| | ||||||||| ||| ||||||||||||||||||||| Sbjct 1995709 AGCAAGTATTTTGGGACCCAAAATATGGTGAACTATGCCTGAATA 1995665 Score = 129 bits (142), Expect = 2e-27 Identities = 82/89 (92%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 595 TGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654 |||||||||||||||||||||||||| ||||||| ||| | || ||||||| |||||||| Sbjct 1994933 TGAATAGGGTGAAGCCAGAGGAAACTTTGGTGGAAGCTTGTAGTGGTTCTGACGTGCAAA 1994874 Query 655 TCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| |||||||||||||||||||||| Sbjct 1994873 TCGATCATCAAATTTGGGTATAGGGGCGA 1994845 Score = 118 bits (130), Expect = 4e-24 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| |||||||||||||||||||||| || |||| |||||||| | ||||| ||||||| Sbjct 1996795 GAGTTGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGCTAAAT 1996736 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 || || ||||||||||||| ||||||| |||| ||||||| | | ||||| Sbjct 1996735 ATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATCCATACCACTT 1996681 >seq64 Length=3295534 Score = 120 bits (132), Expect = 1e-24 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||| Sbjct 1885885 GGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGGTTCTGACGTGCAAATCAATC 1885826 Query 661 GTCAAATTTGGGTATAGGGGC 681 ||||||||||||| |||||| Sbjct 1885825 ATCAAATTTGGGTAAAGGGGC 1885805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998133850