Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq67 333 4e-89 seq79 280 2e-73 seq87 174 3e-41 seq50 80.6 4e-13 seq21 77.0 5e-12 >seq67 Length=14727 Score = 333 bits (368), Expect = 4e-89 Identities = 231/258 (90%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6414 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 6355 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 6354 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 6296 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| ||| || | || |||||| |||| |||||||||||||||||||||||| ||||| Sbjct 6295 ACCTGCCAAAG-CAATACGGGCTAGTTAGTAGGTTAAGGTCTCGTTCGTTATCGTAATTA 6237 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | | | ||| |||| |||| ||||||||||||||||||||||||||||| | |||||||| Sbjct 6236 AACTGCCAAGTCACCCCACGAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 6177 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 6176 AAGAGCTCTCAATCTGTC 6159 Score = 192 bits (212), Expect = 9e-47 Identities = 114/119 (96%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 14705 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCACTCCAC 14646 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| Sbjct 14645 CAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGAGCTCTCAATCTGTC 14587 >seq79 Length=2739959 Score = 280 bits (310), Expect = 2e-73 Identities = 217/258 (84%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1997927 TACTTGCTGGCTTGGTCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1997986 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 || | ||||| |||| ||||||||| || | | ||||||||||||||||| ||| Sbjct 1997987 ACATTTTATTTCCTCCAACTTCCATCAACTAAACGTTGATAGTCCCTCTAAGAAGTTAGC 1998046 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| | ||| | || |||||||||||| ||||||||||| |||||| |||||| Sbjct 1998047 AGCCAGACGTAGCCAGCTGGACTATTTAGCAGGAGAAGGTCTCGTTTGTTATCAGAATTA 1998106 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| Sbjct 1998107 ATCAGACAAATCACTCCACCAACTAAGAATGGCCATGCACCACCAACCACAGAATCAAGA 1998166 Query 241 AAGAGCTATCAATCTGTC 258 || |||||||||| |||| Sbjct 1998167 AAAAGCTATCAATATGTC 1998184 >seq87 Length=2694766 Score = 174 bits (192), Expect = 3e-41 Identities = 134/161 (83%), Gaps = 10/161 (6%) Strand=Plus/Plus Query 98 AATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAA 157 |||||||||||||||| | |||| ||| | || |||||||||||| || Sbjct 1086022 AATAGTCCCTCTAAGATGTCAGCAGCCAGCT----------GGACTATTTAGCAGGAGAA 1086071 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1086072 TGTCTTGTTTGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACAGCCATG 1086131 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||| | |||||||||| ||||||||||||||| Sbjct 1086132 CACCACCAACCACAAAATCAAGAAAAAGCTATCAATCTGTC 1086172 >seq50 Length=3764872 Score = 80.6 bits (88), Expect = 4e-13 Identities = 73/90 (81%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC---CATTGGCT 90 ||||| || ||||||||||||||||||||||||||||||||| |||||| ||| || Sbjct 2493590 GGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCCATCATCAACT 2493532 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 | | |||||||||| |||||| |||| Sbjct 2493531 TAACGTTGATAGTCCCTCAAAGAAGTCAGC 2493502 >seq21 Length=1284999 Score = 77.0 bits (84), Expect = 5e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 50 |||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1277234 TACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 1277185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799328447