Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq67 172 7e-41 seq79 168 8e-40 seq22 89.7 6e-16 >seq67 Length=14727 Score = 172 bits (190), Expect = 7e-41 Identities = 157/193 (81%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 14198 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 14139 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 14138 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAACA 14079 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 | ||| |||| ||||| || || ||| ||| ||| | || |||||| ||| Sbjct 14078 CGCCCAGTGAAGGGCAT-GAGGTTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTACACGC 14020 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 14019 GGTGAGGCGGACC 14007 Score = 154 bits (170), Expect = 2e-35 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 5772 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTTTATTATTCCATGCTAATGTATTCG 5713 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| |||| |||||||||||| |||| | || Sbjct 5712 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCGCCA 5653 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 | ||| |||| ||||| || ||| || | ||| | || |||| | ||| Sbjct 5652 CGCCCAGTGAAGGGCATGGGGTTCCACAGAGGGAAAGGCCCGGCCGGACCAGTGCACGCG 5593 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 5592 GTGAGGCGGACC 5581 >seq79 Length=2739959 Score = 168 bits (186), Expect = 8e-40 Identities = 156/194 (80%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||| ||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 1998555 CTAGAAAACAACAAAATAGAATCACATGTCCTATTTTATTATTCCATGCTAATGTATTCA 1998614 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | | Sbjct 1998615 GGCATAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCTCCAA 1998674 Query 126 CA-CCAATGAAG-GCATACGGGCTCACCAAGAGGTAGGGCT-GGGTAATGCAGTACTCGC 182 || ||| | ||| |||| | ||||||||||||| | || || |||||| | | Sbjct 1998675 CACCCAGTAAAGTGCATTGAAGTTCACCAAGAGGTAAGCCTCCAACAAATCAGTACACAC 1998734 Query 183 CGTGAGGCGGACCA 196 | |||||||||| Sbjct 1998735 CAAAAGGCGGACCA 1998748 >seq22 Length=1232782 Score = 89.7 bits (98), Expect = 6e-16 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCAC-GTCCTATTCTATTATTCCATGCTAATGTATTC 64 ||||||||||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 679367 CTAGAAACCAACAAAATAG--AATCAGTGTCCTATTTTATTATTCCATGCTAATGTATTC 679424 Query 65 GGGCGTAAGCCTGCT 79 ||| |||||||||| Sbjct 679425 AGGCATAAGCCTGCT 679439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595199498358