Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq67 288 1e-75 seq79 199 4e-49 seq22 93.3 4e-17 >seq67 Length=14727 Score = 288 bits (318), Expect = 1e-75 Identities = 179/191 (94%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14085 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 14144 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 14145 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 14203 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 14204 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTC 14263 Query 181 TTGGATTTATT 191 ||||||| ||| Sbjct 14264 TTGGATTGATT 14274 Score = 269 bits (298), Expect = 3e-70 Identities = 175/191 (92%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| | || | |||||||| |||||||||| Sbjct 5659 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATA 5718 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 5719 CATTAGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 5777 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| Sbjct 5778 CCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 5837 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 5838 TTGGATTTATT 5848 >seq79 Length=2739959 Score = 199 bits (220), Expect = 4e-49 Identities = 159/190 (84%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||| Sbjct 1998668 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCCTGAATA 1998609 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| |||||||| || | ||||||||||| | ||||||||| | Sbjct 1998608 CATTAGCATGGAATAATAAAATAGGACATGTGATTCTATTTTGTTGTTTTCTAGGATTAC 1998549 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 || ||||||| |||| | ||| ||||| | ||||| || |||| ||||||||||| Sbjct 1998548 CC-TAATGATGAATAGGCTCAGTTGGGGGCATTTGTATTACATCGTCAGAGGTGAAATTC 1998490 Query 181 TTGGATTTAT 190 ||||||| || Sbjct 1998489 TTGGATTGAT 1998480 >seq22 Length=1232782 Score = 93.3 bits (102), Expect = 4e-17 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 41 AGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATT 100 ||||||| | ||| |||||||||| |||||||||||| |||||||| | ||||||| Sbjct 679439 AGCAGGCTTATGCCTGAATACATTAGCATGGAATAATAAAATAGGAC-ACTGATTCTATT 679381 Query 101 TTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTC 160 |||| ||||||||| | |||||||| || | | ||| ||||| | || | Sbjct 679380 TTGTTGGTTTCTAGTA-TTACCGTAATGTGGAAAAGAGTCAGTTGGGGGCATTTGTGATA 679322 Query 161 AATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||||||| ||||||||||||| || Sbjct 679321 CATAGCCAAAGGTAAAATTCTTGGATTGAT 679292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999568480