Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq63 73.4 6e-11 seq61 73.4 6e-11 seq53 73.4 6e-11 seq48 73.4 6e-11 >seq63 Length=15179 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||| |||| ||| || ||| ||||||||||||| ||| | ||| | | | ||||||| | Sbjct 8156 CCGTACTGACTCACGTCGTACTGAACCCAGCTCACGTAGCACTTCACTAGACGAACAGTC 8215 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| | || ||||| | |||||| | |||||||||||| Sbjct 8216 TAACCCTTACAAGCTTCTTCACCTGTAGGATGTGCTGAGCCGACATCG 8263 >seq61 Length=15562 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||| |||| ||| || ||| ||||||||||||| ||| | ||| | | | ||||||| | Sbjct 8182 CCGTACTGACTCACGTCGTACTGAACCCAGCTCACGTAGCACTTCACTAGACGAACAGTC 8241 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| | || ||||| | |||||| | |||||||||||| Sbjct 8242 TAACCCTTACAAGCTTCTTCACCTGTAGGATGTGCTGAGCCGACATCG 8289 >seq53 Length=22702 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||| |||| ||| || ||| ||||||||||||| ||| | ||| | | | ||||||| | Sbjct 12611 CCGTACTGACTCACGTCGTACTGAACCCAGCTCACGTAGCACTTCACTAGACGAACAGTC 12670 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| | || ||||| | |||||| | |||||||||||| Sbjct 12671 TAACCCTTACAAGCTTCTTCACCTGTAGGATGTGCTGAGCCGACATCG 12718 >seq48 Length=39949 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 168 CCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||| |||| ||| || ||| ||||||||||||| ||| | ||| | | | ||||||| | Sbjct 168 CCGTACTGACTCACGTCGTACTGAACCCAGCTCACGTAGCACTTCACTAGACGAACAGTC 227 Query 228 CAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| | || ||||| | |||||| | |||||||||||| Sbjct 228 TAACCCTTACAAGCTTCTTCACCTGTAGGATGTGCTGAGCCGACATCG 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799341932