Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq67 486 4e-135 seq79 286 7e-75 seq21 250 5e-64 seq17 87.8 3e-15 seq50 86.0 1e-14 >seq67 Length=14727 Score = 486 bits (538), Expect = 4e-135 Identities = 293/309 (95%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||| ||||| | |||||||| ||||||||||||||||| Sbjct 6250 GAACGAGACCTTAACCTACTAACTAGCCCGTATTGCTTTGGCAGGTCGCCGGCTTCTTAG 6309 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6310 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 6369 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6370 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATTTCCTTGGCCG 6429 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6430 AAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 6489 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 6490 CTCTTCAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 6549 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 6550 CCCTTTGTA 6558 >seq79 Length=2739959 Score = 286 bits (316), Expect = 7e-75 Identities = 247/305 (81%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 23 CGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAGAGG 82 ||||||||| |||||||||||| | || ||| | | || || ||||||||||| Sbjct 1998090 CGAGACCTTCTCCTGCTAAATAGTCCAGCTGGCTACGTCTGGCTGCTAACTTCTTAGAGG 1998031 Query 83 GACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141 ||||||| | | || |||||||||| |||| ||||| | |||||||||||||||||| Sbjct 1998030 GACTATCAACGTTTAGTTGATGGAAGTTGGAGGAAATAAAATGTCTGTGATGCCCTTAGA 1997971 Query 142 TGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGA 201 |||||||||||||||||| ||||||||||| ||||| | ||| |||||||| | | | Sbjct 1997970 TGTTCTGGGCCGCACGCGTGCTACACTGACCAAGCCAGCAAGTATATCACCTTATCTGAA 1997911 Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 | | ||||||||||||| ||| | |||||| ||| |||| |||||||||||||||||| Sbjct 1997910 AAGATTGGGTAATCTTGTGAAAATTGGTCGTGATGGTGATAAAGCATTGCAATTATTGCT 1997851 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 ||||||||||||| ||||||||| | ||||||||| | | ||| |||||||||||||| Sbjct 1997850 TTTCAACGAGGAATACCTAGTAAGTGTATGTCATCAGAATGTGTTAATTACGTCCCTGCC 1997791 Query 322 CTTTG 326 | ||| Sbjct 1997790 CGTTG 1997786 Score = 96.9 bits (106), Expect = 7e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||||||||||||| |||||| ||||||||| | ||||||||||| ||||||||| | || Sbjct 1088347 ATTGCTCTTCAACAAGGAATACCTAGTAAGTGTATGTCATCAGCATGCGTTGATTGCATC 1088288 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 1088287 CCTGCCCTTTGTA 1088275 >seq21 Length=1284999 Score = 250 bits (276), Expect = 5e-64 Identities = 171/193 (89%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1277185 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCACCTTA 1277244 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 | | || | ||||||||||||| ||||| |||||| |||||||| |||||||||||| Sbjct 1277245 TCTGAAAAGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAAAGCATTGCAATT 1277304 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 |||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 1277305 ATTGCTTTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTGATTACGTC 1277364 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 1277365 CCTGCCCTTTGTA 1277377 >seq17 Length=1551487 Score = 87.8 bits (96), Expect = 3e-15 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 |||||||| ||||| || ||| | ||||| |||||||||||| ||||| | ||| || Sbjct 270407 AATCTTGTAAAACTTGGTTGTGATAAGGATAAAGCATTGCAATTGTTGCTTTCAAACAAG 270348 Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 | || ||| ||||| | | |||||||| || |||||||| |||||||||| Sbjct 270347 GCATACCTGATAAGCACATTCCATCAGCATGCTTTGATTAC-CCCCTGCCCTT 270296 >seq50 Length=3764872 Score = 86.0 bits (94), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 5/85 (6%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATG---GAAGTTTGAGGCAATAACAGGTCT 127 |||||| ||||||||||| | | ||| |||| |||||| ||||||||||||||||| Sbjct 2493507 CTTCTTTGAGGGACTATCAACGTTAAGTTGATGATGGAAGTTGGAGGCAATAACAGGTCT 2493566 Query 128 GTGATGCCCTTAGATGTTCTGGGCC 152 |||||||||||||||| || ||||| Sbjct 2493567 GTGATGCCCTTAGATG-TCCGGGCC 2493590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199175936