Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq67 850 0.0 seq21 749 0.0 seq7 253 7e-65 seq64 179 1e-42 seq17 178 4e-42 >seq67 Length=14727 Score = 850 bits (942), Expect = 0.0 Identities = 511/537 (95%), Gaps = 3/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 1379 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 1319 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||| Sbjct 1318 AGCCCGCGAAGGACTTTAATGCAAGAAAATGGTCGATGAAGACCAGTTCCGCTTCATTGA 1259 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 1258 TTAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 1202 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 1201 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 1142 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 1141 TTTCCCCGCTGATTTTGCGAAGCCCGTTCCCTTCGCTGTGGTTTCGCTAGATAGTAGATA 1082 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 1022 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 962 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 961 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTTCTG 905 Score = 801 bits (888), Expect = 0.0 Identities = 501/537 (93%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 9848 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 9789 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 9788 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 9729 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 9728 GGCCCGCGAAGGACCTTAATACCAGAAGTTGGACGT--AAATCCAGCCCCGCTTCATTGA 9671 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 9670 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 9614 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 9613 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 9554 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 9553 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 9494 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9493 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 9434 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9433 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 9374 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 9373 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTTCTG 9317 >seq21 Length=1284999 Score = 749 bits (830), Expect = 0.0 Identities = 491/538 (91%), Gaps = 5/538 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1280898 CTTTTGTTCTACTTGAGATTTCTGTTCTCAATGAGTCCCCCTTAGGACACCTGCGTTATT 1280839 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1280838 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCAGATC 1280779 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||| ||||||||||| | | ||| ||| || || |||| || |||||||||| Sbjct 1280778 AGCCCAAAAAGGACCTTAATACTAAAAAGTGGGATGTTAATCCCAGCTCTGCTTCATTGA 1280719 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||| || |||| ||||||||||||||||| |||| | ||||||||||| Sbjct 1280718 ATAAGTAAAAAGACAATAAAGGTAGTGGTATTTCACTGGCGCTTAC---GCTCCCACTTA 1280662 Query 247 TTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||| ||| | ||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 1280661 TTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTT 1280603 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280602 CTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 1280543 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280542 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 1280483 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1280482 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 1280423 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 1280422 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACACCACTTTCTG 1280365 >seq7 Length=2551593 Score = 253 bits (280), Expect = 7e-65 Identities = 181/207 (87%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||| | |||||| |||||||||||||| |||||||| ||||||| | | | |||||| Sbjct 1205545 CTTGGATATGGTTTTGCTAGATAGTAGATGGGGACAGTCGGAATCTTGCTCGTTCATTCA 1205604 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 || | |||||| |||||||||| |||||| |||||||||| ||||||||||||||| ||| Sbjct 1205605 TGTGTGTCACTTATTAGATGACAAGGCATCTGGCTACCTTCAGAGAGTCATAGTTATTCC 1205664 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 | | |||||| || |||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 1205665 CACTATTTACCTGC-CTTGATTGAATTTCTTCACTTTGATATTCAGAGCACTGGGCAGAA 1205723 Query 517 ATCACATTGCGTCAACATCACTTTCTG 543 ||||||||| ||||||| ||||||||| Sbjct 1205724 ATCACATTGTGTCAACACCACTTTCTG 1205750 Score = 154 bits (170), Expect = 5e-35 Identities = 106/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||||||||| ||||||||||| || |||||||| ||||||| |||||| ||||||| Sbjct 1205352 TTGGCTGTGGTTTTGCTAGATAGTACATGGGGACAGTCGGAATCTTGTTAATTCATTCAT 1205411 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 | || ||||||||| |||| | ||||||||||||||||| |||||||||||| || |||| Sbjct 1205412 GTGCTTCACTAATTGGATGGCAAGGCATTTGGCTACCTTTAGAGAGTCATAGCTATTCCC 1205471 >seq64 Length=3295534 Score = 179 bits (198), Expect = 1e-42 Identities = 113/122 (93%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||| ||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||| Sbjct 1886134 GCAATTGCCTACCTTAAGAAAGTCATAGTTACTCCCGCCGTTTACCCGTGCTTAGTTGAA 1886075 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTC 541 ||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||| Sbjct 1886074 TTTCTTCACTTTGACATTCAGGGAACTGGGCAGAAATCACATTGTGTCAACACCACTTTC 1886015 Query 542 TG 543 || Sbjct 1886014 TG 1886013 >seq17 Length=1551487 Score = 178 bits (196), Expect = 4e-42 Identities = 130/151 (86%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| ||||| ||||||||| ||||| ||||||||||||||| |||||||| |||| Sbjct 274898 TTTTGTTCTACTTGAGATTTCTATTCTCAATGAGTCCCCCTTAGAACACCTGCATTATTA 274957 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 274958 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCAGATCA 275017 Query 128 GCCCGCGAAGGACCTTAACGCCAGAAAATGG 158 ||| ||||||||||| | | ||| ||| Sbjct 275018 GCCTAAAAAGGACCTTAATACTAAAAAGTGG 275048 Score = 111 bits (122), Expect = 5e-22 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCAC 537 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 259254 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACACCAC 259313 Query 538 TTTCTG 543 |||||| Sbjct 259314 TTTCTG 259319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198577376