Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq67 289 5e-76 seq21 98.7 2e-18 seq17 93.3 7e-17 >seq67 Length=14727 Score = 289 bits (320), Expect = 5e-76 Identities = 234/278 (84%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 10171 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 10228 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 10229 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 10288 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||||| |||| ||||| |||| ||||| |||||||||||||||||||||||| || Sbjct 10289 GAACGGGACGATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 10348 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||||| ||| | || |||| | | | | | |||||||| ||| Sbjct 10349 CTTAGCAGGCC-ATAACTCCTCTTTCGTTGAAGTCGGAAGAGGT-AATTGGCGGATAGCA 10406 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||| ||||| ||||||||||||||||| Sbjct 10407 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 10444 Score = 284 bits (314), Expect = 2e-74 Identities = 233/278 (84%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| Sbjct 1762 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 1819 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 1820 GCCGCGAAGCTACCATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 1879 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||||| |||| ||||| |||| ||||| |||||||||||||||||||||||| || Sbjct 1880 GAACGGGACGATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 1939 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||||| ||| | || |||| | | | | | |||||||| ||| Sbjct 1940 CTTAGCAGGCC-ATAACTCCTCTTTCGTAGAAGTCGGAAGAGGT-AATTGGCGGATAGCA 1997 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||| ||||| ||||||||||||||||| Sbjct 1998 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 2035 >seq21 Length=1284999 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| |||||||| ||| | |||| || | || | Sbjct 1281223 GTACGAGAGGAACCGTTCA-TTCACG-TAATTGGTATTTACACCTGTTCGAGAGGACAAT 1281280 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| |||||||||||||||||||||||||||| |||||||| ||| | Sbjct 1281281 GGTGTGAAGCTACCACGTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 1281340 Query 121 GAA 123 ||| Sbjct 1281341 GAA 1281343 >seq17 Length=1551487 Score = 93.3 bits (102), Expect = 7e-17 Identities = 98/124 (79%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGG-CAG 59 ||||||||||||| | | |||| |||||| | ||| | |||| | | ||| || Sbjct 274064 GTACGAGAGGAACTGTTCA-TTCACG-TAATTGATATTTACACCTGT-TCAAGAGGACAA 274008 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 || | |||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 274007 TGGTGTGAAGCTACCACGTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCATGCT 273948 Query 120 AGAA 123 |||| Sbjct 273947 AGAA 273944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199309568