Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq67 807 0.0 seq79 609 7e-172 seq21 594 2e-167 seq32 544 2e-152 seq17 295 2e-77 >seq67 Length=14727 Score = 807 bits (894), Expect = 0.0 Identities = 482/504 (96%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || || |||| ||||||||| ||| |||||||| ||||| |||||||||||| ||||||| Sbjct 5445 GTTCTTATTCTAATTACAAGGCCCTAAAGAGCCTTGTATTAGTATTTATTGTTACTACCT 5386 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5385 CCCTAAATTAGGATTAGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5326 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5325 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 5266 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5265 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCG 5206 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 5205 CAAGGCCATGCGATTCGTTAAGTTATTATGATTCACCAAGGAGCCCCGAAGGGCATTGGT 5146 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 5145 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGAGGTTTTTAGCATGTATTAGCTCTAG 5086 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5085 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 5026 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 5025 GCCATTCGCAGTTTCACCGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTTG 4967 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 4966 AGACAAGCATATGACTACTGGCAG 4943 Score = 762 bits (844), Expect = 0.0 Identities = 472/504 (94%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 13871 GTACTCATTCCAATTACAAGACCCTAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 13812 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 13811 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 13752 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 13751 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 13692 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 13691 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 13632 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| Sbjct 13631 CAAGGCCATGCGATTCGCGAAGTTATCATGAATCACCAAGGAGCCCCGAAGGGCATTGGT 13572 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 13571 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 13512 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 13511 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 13452 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 13451 GCCATTCGCAGTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 13393 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 13392 AGACAAGCATATGACTACTGGCAG 13369 >seq79 Length=2739959 Score = 609 bits (674), Expect = 7e-172 Identities = 440/506 (87%), Gaps = 3/506 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| |||||||||||||||| | || |||||||| ||||||||| Sbjct 1998865 GTGCTCATTCCAATTGTAAGACCCAAAAGAGCCATACATTGTTATTTATTTTCACTACCT 1998924 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| |||||||||| ||||||||||||||||| ||||| ||| || |||||| Sbjct 1998925 CCCTGTGTTGGGATTGGGTGATTTGCGCGCCTGCTGCAATCCTTAGATTTGAGGGCCGTT 1998984 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| | ||||||||||| ||||||| || ||| ||||||| | ||||||||| Sbjct 1998985 TCTCAGGCCCTCTCTCCGGAATTGAACCCTTATCCCCTGTTACCCATCATCACCATGGTA 1999044 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| Sbjct 1999045 GGCCTCTATCCTACCATAAAAAGTTGATAGGGCAGATATTTGAATGAAGCATCACCGGCA 1999104 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||| ||| | |||||||||||| ||||||||||| |||||||| | || || Sbjct 1999105 CAAGGCCATGCAATTTGAGAAGTTATTATGAGTCACCAAGGAGACCCGAAGGCCATTTGT 1999164 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||| ||| | ||| |||| |||||||||||||||| Sbjct 1999165 TTTTTATCTAATAAATACACCCCTTGAAAAGGTTGGGGCTTTTCAGCATGTATTAGCTCT 1999224 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||||||| || |||||||||| |||||||||||||| Sbjct 1999225 AGAATTACCACAGTTATCCATGTAGTAAGCTATCATCAAATAAAATATAACTGATTTAAT 1999284 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1999285 GAGCCATTTTCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTT 1999343 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||| Sbjct 1999344 TGAGACAAGCATATGACTACTGACAG 1999369 >seq21 Length=1284999 Score = 594 bits (658), Expect = 2e-167 Identities = 436/505 (86%), Gaps = 3/505 (1%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||| |||||||||||||||| | | ||||||||||||||||||| Sbjct 313724 TACTCATTCCAATTGTAAGACCCAAAAGAGCCATACACTGTTATTTATTGTCACTACCTC 313783 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||||||||||||||||| ||||||| ||||||||| |||| ||| || ||| ||| Sbjct 313784 CCCGTGTCGGGATTGGGGAATTTGCACGCCTGCTGAAAACCTTAGATTTGAGGGCCTTTT 313843 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||| | ||||| |||||| |||||| |||| ||||||||||| || ||||||| Sbjct 313844 CTCAGGCCCTCTCTCTGGAATCAAACCCTTATTCTCCGTTACCCGTCATCACTATGGTAG 313903 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||| ||||||||||||||||||||||||||| ||| |||| |||||| |||| || || | Sbjct 313904 GCCTCTATCCTACCATCGAAAGTTGATAGGGAAGATATTTTAATGAAGCATCACCAGCAC 313963 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 ||||||||| || | |||||||||||| ||||||||||| ||| |||| | |||||| Sbjct 313964 AAGGCCATGTAGTTTGAGAAGTTATTATGAGTCACCAAGGAGACCCCAAGGCCATTGGTT 314023 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTA 359 |||||||||||||||||||||||||| ||| | ||| |||| ||||||| |||||||| Sbjct 314024 TTTTATCTAATAAATACACCCCTTCCAAAGGTTGGGGCTTTTCAGCATGTGATAGCTCTA 314083 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 314084 GAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGATTTAATG 314143 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 314144 AGCCATTTTCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTTAATCTTT 314202 Query 480 GAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| ||| || Sbjct 314203 GAGACAAGCATATGACTATTGGAAG 314227 Score = 471 bits (522), Expect = 1e-130 Identities = 306/332 (92%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| | Sbjct 1284999 TGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCAC 1284940 Query 236 CGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCG 295 |||| ||||||||||||||||| |||||||||||| ||||||||||| ||| |||| | Sbjct 1284939 CGGCACAAGGCCATGCGATTCGAGAAGTTATTATGAGTCACCAAGGAGACCCAAAGGCCA 1284880 Query 296 TTGG-TTTTTTATCTAATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATT 352 |||| |||||||||||||||||||||||||||| ||| | ||| | || |||||||||| Sbjct 1284879 TTGGTTTTTTTATCTAATAAATACACCCCTTCCAAAGGTTGGGGCTATTCAGCATGTATT 1284820 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct 1284819 AGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAATAAACTATAACTGA 1284760 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 1284759 TTTAATGAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATACTTAGACATGCATGGCTT 1284701 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| Sbjct 1284700 AATCTTTGAGACAAGCATATGACTACTGGCAG 1284669 >seq32 Length=630273 Score = 544 bits (602), Expect = 2e-152 Identities = 424/497 (85%), Gaps = 8/497 (2%) Strand=Plus/Plus Query 12 AATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGG 71 |||| |||||||||||||||| | || | |||||||||||| ||||||||||| || Sbjct 119337 AATTGTAAGACCCAAAAGAGCCATACATTGTTGTTTATTGTCACTTCCTCCCCGTGTTGG 119396 Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG-GTAGCCGTTTCTCAGGCTC 130 | ||||||||||||| | || ||||| | ||| ||| ||| | ||| ||||||| | Sbjct 119397 GCTTGGGTAATTTGCACTCCCGCTGCAATACTTAGATTCAAGTA-CTGTTGCTCAGGCCC 119455 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 ||||| |||||| |||||| |||||| ||| || || ||||||||||||| ||||| Sbjct 119456 TCTCTCTGGAATCAAACCCTTATTCCCTGTT-CCTGTCATCACCATGGTAGGCCTCTATC 119514 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATG 250 |||||||||||||||||||| ||||| ||||||||||| |||| || || || | ||||| Sbjct 119515 CTACCATCGAAAGTTGATAGAGCAGATATTTGAATGAAGCATCACCTGCACATGCCCATG 119574 Query 251 CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG-TTTTTTATCT 309 | |||| ||| |||||||| ||||||||||| ||| |||| | |||| |||||||||| Sbjct 119575 CAATTCAAGAAGGTATTATGAGTCACCAAGGAGACCCAAAGGCCATTGGTTTTTTTATCT 119634 Query 310 AATAAATACACCCCTTCCGAAG--TCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 |||||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||| Sbjct 119635 AATAAATACACCCCTTCCAAAGGTTGGGGCTTTTCAGCATGTATTAGCTCTAGAATTACC 119694 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 || |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| Sbjct 119695 ACAGTTATCCATGTAGTAAGGTATCATCAAAT-AACTATAACTGATTTAATGAGCCATTT 119753 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| Sbjct 119754 GCAGTTTCACTGTATAG-TTGTTTATACTCAGACATGCATGGCTTAATCTTTGAGACAAG 119812 Query 488 CATATGACTACTGGCAG 504 ||||||||||||||||| Sbjct 119813 CATATGACTACTGGCAG 119829 >seq17 Length=1551487 Score = 295 bits (326), Expect = 2e-77 Identities = 297/377 (79%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT--TGATACCATGGTAGGCCACTATC 190 ||||| | || ||| ||| ||||| | ||| || |||| ||| | ||||| ||||| Sbjct 270523 TCTCCAGGATTGAAGCCTTATTCCATATGACCTGTCATGAT--CATAGCAGGCCTCTATC 270580 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATG 250 ||||||| || |||||||||||||| |||| ||||| |||| || || || || | Sbjct 270581 TTACCATCAAATGTTGATAGGGCAGATGTTTGGATGAAGCATCACCAGCAGAAAGCTTGG 270640 Query 251 CGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTA 310 | |||| |||||| |||| || |||||| | | |||| | ||||||||||||| | Sbjct 270641 CAATTCAAGAAGTTA--ATGAGACATCAAGGAAACTCAAAGGCCATTGGTTTTTTATCCA 270698 Query 311 ATAAATACACCCCTTCCGAAG--TCGGGGTTTTT-AGCATGTATTAGCTCTAGAATTACC 367 ||||||||| | || || | | |||| |||| ||||||||||| ||||||||||||| Sbjct 270699 ATAAATACATCTCTGCCATGGGTTAGGGGCTTTTCAGCATGTATTATCTCTAGAATTACC 270758 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 || ||||| ||| |||||||| || ||||||||||| || ||||||||||||||||| || Sbjct 270759 ACAGTTATACATATAGTAAGGCACCATCAAATAAACTATGACTGATTTAATGAGCCA-TC 270817 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||||| ||| || ||||||||||||||| |||| ||||| ||| || Sbjct 270818 ACAGTTTCACTGTATAG-TTGTTTGTACTTAGACATGCATTGCTT-GGCTTTGGGACTAG 270875 Query 488 CATATGACTACTGGCAG 504 ||||| |||| |||||| Sbjct 270876 CATATAACTATTGGCAG 270892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510398685952