Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq55872 214 3e-53 seq46155 172 8e-41 seq8218 158 2e-36 >seq55872 Length=1016 Score = 214 bits (236), Expect = 3e-53 Identities = 158/182 (87%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46 CTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||||||||| ||| |||||||||||| ||| |||||||||| |||||||||||||||| Sbjct 700 CTTACTAGGTATT-CCTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCATCACGACC 758 Query 106 AAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164 || ||||| |||||||||| ||| || | ||||||||| ||||| || | |||| Sbjct 759 AAGTTTCACAAGATTACCCAATCCTTTCAGATAAGGTGATATACTCGCTGGCTTGGTCAG 818 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 819 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAAC 878 Query 225 TT 226 || Sbjct 879 TT 880 >seq46155 Length=1264 Score = 172 bits (190), Expect = 8e-41 Identities = 170/216 (79%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 |||||||||||| |||||| ||| |||||| ||||||||||| ||| |||| Sbjct 523 CAAAGGGCAGGGCA-----CAACGCATGCT-GATGACATACGCTTACTAGGTATT-CCTC 575 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122 |||||||| ||| |||||||||| |||||||||||||||| || ||||| ||||||||| Sbjct 576 GTTGAAGAGCAATAATTGCAATGCTCTATCCCCATCACGACCAAGTTTCACAAGATTACC 635 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 | ||| || | ||||||||| ||| || | ||||||||| ||| |||| ||| Sbjct 636 CAATCCTTTCAGATAAGGTGATATACTTTCTGGCTTGGTCAGTGTAGTGCGTGTGCAGCC 695 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||||||| ||||| || |||||||||||||| || Sbjct 696 CAGAACATTTAAGGAAATTACAGACCTGTTATTTCC 731 >seq8218 Length=4004 Score = 158 bits (174), Expect = 2e-36 Identities = 145/182 (80%), Gaps = 11/182 (6%) Strand=Plus/Minus Query 46 CTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||||||||| ||| |||| || | || || ||||| ||| ||||||||||||||| | Sbjct 3999 CTTACTAGGTATT-CCTCATTAAGGAGGAATAATTGAAATTATCTATCCCCATCACAACC 3941 Query 106 AAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164 | ||||| ||||||||| | ||||||||| ||||| || | |||| Sbjct 3940 AGGTTTCACAAGATTACCTAAAT---------AAGGTGATATACTCGCTGGCTTGGTCAG 3890 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 3889 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAAC 3830 Query 225 TT 226 || Sbjct 3829 TT 3828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751582503935