Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq55872 257 3e-66 seq46155 237 3e-60 seq8218 192 1e-46 seq21881 77.0 6e-12 >seq55872 Length=1016 Score = 257 bits (284), Expect = 3e-66 Identities = 186/214 (87%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||| |||| |||||||| | | || ||| ||||| ||||||||||||||||||||| Sbjct 913 TTCCTAGAAGGACTATCAACATTTAGTTTATGCAAGTTGGAGGCAATAACAGGTCTGTGA 854 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 853 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCAC 794 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| | | |||| ||||||||||||| ||||| |||||| ||||||||||||||||| Sbjct 793 CTTATCTGAAAGGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAGAGCATTGC 734 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 |||||||||||||||||||||||| ||||||||| Sbjct 733 AATTATTGCTCTTCAACGAGGAATACCTAGTAAG 700 >seq46155 Length=1264 Score = 237 bits (262), Expect = 3e-60 Identities = 207/256 (81%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| |||| | || ||||| ||| | || |||||||||||||| Sbjct 773 CTTCTTAGAGGGAGTATCAAAGTTTAGTTGATGGCAGTCAGTGGAAATAACAGGTCTGTA 714 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||| ||||||||||| |||| ||| |||||||||| ||||| ||| |||| Sbjct 713 ATTTCCTTAAATGTTCTGGGCTGCACACGCACTACACTGACCAAGCCAGAAAGTATATCA 654 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| | | |||| ||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 653 CCTTATCTGAAAGGATTGGGTAATCTTGTGAAACTTGGTCGTGATGGGGATAGAGCATTG 594 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 593 CAATTATTGCTCTTCAACGAGGAATACCTAGTAAGCGTATGTCATCAGCATGCGTTG--- 537 Query 311 ACGTCCCTGCCCTTTG 326 |||||||||||| Sbjct 536 --TGCCCTGCCCTTTG 523 >seq8218 Length=4004 Score = 192 bits (212), Expect = 1e-46 Identities = 171/214 (80%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||| |||| |||||||| | | || ||| ||||| ||||||||||||||||||||| Sbjct 3795 TTCCTAGAAGGACTATCAACATTTAGTTTATGCAAGTTGGAGGCAATAACAGGTCTGTGA 3854 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 3855 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACCAAGCCAGCGAGTATATCAC 3914 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 ||| | | ||||||||||| |||| || ||| |||||||||| ||| | Sbjct 3915 CTT---------ATTTAGGTAATCTTGTGAAACCTGGTTGTGATGGGGATAGATAATTTC 3965 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 ||||||| ||| | || ||||||| ||||||||| Sbjct 3966 AATTATTCCTCCTTAATGAGGAATACCTAGTAAG 3999 >seq21881 Length=1708 Score = 77.0 bits (84), Expect = 6e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||||||| |||||||| |||||| ||||| |||| || |||||||| || ||| Sbjct 1307 TTGCAATTATTGTTCTTCAACAAGGAATACCTAGAAAGCATATGCCATCAGCATGCATTG 1248 Query 308 ATTACGTCCCTGCCC 322 |||| ||||| ||| Sbjct 1247 ATTAAATCCCTTCCC 1233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946657169152