Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20psidii_20[genbank_20GCA_5F001443065.1_202015-11-13] 57,309 sequences; 129,776,072 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq55356 544 2e-152 seq34863 143 8e-32 >seq55356 Length=1023 Score = 544 bits (602), Expect = 2e-152 Identities = 400/465 (86%), Gaps = 22/465 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| ||||| |||| ||||||||| | | ||||||| ||| Sbjct 976 TATTTGTTGTCACTACCTCCCTGTGTCAGGATAGGGTAATTTTCACACCTGCTGAAATCC 917 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||| || ||| | | ||||||||||||| ||||||||||| Sbjct 916 TTAGATTTG-------------AGGGACAC-----GGAATCGAACCCTTATTCCCCGTTA 875 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 874 CCCGTCATCACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTG 815 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 |||||| |||| ||||| ||||||||||||||| | |||||||||||||||||||| || Sbjct 814 AATGAAGCATCACCGGCACAAGGCCATGCGATTAGAGAAGTTATTATGAATCACCAAAGA 755 Query 283 GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG--TT 339 | ||| | || | ||||||||||||||||||||||||||||| || || || |||| || Sbjct 754 GACCCAAGGGTCATTGGTTTTTTATCTAATAAATACACCCCTCCCAGAGGTTGGGGCTTT 695 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 694 TTCAGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGTAAGGTATCATCAAAT 635 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 634 AAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG-TTGTTTATACTTAG 576 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 531 >seq34863 Length=1228 Score = 143 bits (158), Expect = 8e-32 Identities = 265/385 (69%), Gaps = 4/385 (1%) Strand=Plus/Plus Query 7 ATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||| ||||| || | ||||||||| || ||||| ||||||||||||||| || Sbjct 818 ATTACAATTTCACGGGGAAAAAGAGCCAAAAATTGTTATTTTTTGTCACTACCTCCCTGT 877 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || || ||||||||||| | ||| || | || ||| | || | ||||||| Sbjct 878 GTTGGTATTGGGTAATTCTCATTCCTTCTTAAATGTTTAGATTAAGGGGCTGCTTCTCAG 937 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 | || ||||| | ||| ||| | |||| | |||| | | || ||| |||| | | Sbjct 938 GATCTCTCTCTGTAATTAAACTGTTATTCTAAATGACCCATAAACACTATGTTAGGTCTC 997 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 ||||||||| | | || |||||| ||| ||||||||||| ||| | || | || Sbjct 998 TATCCTACCCTAAATAGCTGATAGCAAAGATATTTGAATGAAAAATCAACAGC-AACGGT 1056 Query 247 CATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTA 306 ||||| ||| | || |||| | | |||| || || ||| | | | || |||| ||| Sbjct 1057 CATGCAATTAGAGAACATATTTTAACTCACAAAATAGACCCAAGGATCATTAGTTTCTTA 1116 Query 307 TCTAATAAATACACCCCTTC-CGAAGTCGG--GGTTTTTAGCATGTATTAGCTCTAGAAT 363 | ||| ||||||||||| | || | || |||| | ||||| ||||||||| | Sbjct 1117 TATAAAAAATACACCCCACCTAGAGATTGGTTATTTTTCAAAATGTAATAGCTCTAGGAC 1176 Query 364 TACCACGGTTATCCATGTAGTAAGG 388 || || || |||||||||||||||| Sbjct 1177 TATCAAGGATATCCATGTAGTAAGG 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509534404864